PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977351.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SRS
Protein Properties Length: 392aa    MW: 42350.6 Da    PI: 7.0672
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022013.6e-621423234153
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......................aeaaskrk 75 
                      +++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerq+ql ++++++ +++                       +++ +kr 
  XP_024977351.1 142 SGMNCQDCGNQAKKDCEHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQHQLMSLTQQQHHHQhqqdlgnqqlslmmrasgggesgDDQIPKRL 236
                     568*****************************************************999988884334443333333333333333222222222 PP

          DUF702  76 relkskkqsalsstklssaeskkeletss.................................lPeevsseavfrcvrvssvddgeeelaYqtavs 137
                     re+                    +    +                                 +P+ev+s+avfrcvrvs++d++ee+laYqta +
  XP_024977351.1 237 RED--------------------H----QhqpsiavagsgggmgmilpapqhhntsglevghFPAEVNSPAVFRCVRVSAMDEAEEQLAYQTALN 307
                     222....................1....1123344455566666666777777777777777********************************* PP

          DUF702 138 igGhvfkGiLydqGle 153
                     igGhvfkGiLyd+G+e
  XP_024977351.1 308 IGGHVFKGILYDHGPE 323
                     **************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MSGFFSLGGG IGIGKVDEEH HHHLQDQEHD DGIISPQSLY LFKNEEIYSK GFELWQECYQ  60
FHQHRQHLYQ PPQHYDQLGV GSRSDRRRSS SVSSGVSGGV DDLDRNASSW NIFGGVGSTV  120
MRQGGYGIGG GSGSGSGSGS GSGMNCQDCG NQAKKDCEHM RCRTCCKSRG FHCQTHVKST  180
WVPAAKRRER QHQLMSLTQQ QHHHQHQQDL GNQQLSLMMR ASGGGESGDD QIPKRLREDH  240
QHQPSIAVAG SGGGMGMILP APQHHNTSGL EVGHFPAEVN SPAVFRCVRV SAMDEAEEQL  300
AYQTALNIGG HVFKGILYDH GPEGRYNNPG EGSSSGGGGA QLQQLITSGR TAGATASTSI  360
HPAVNFIDPS STYPTPFSAF MAGTQFFPPP RS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-65SRS family protein