PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977119.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 356aa MW: 39893 Da PI: 5.4411

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.4e-55	12	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++++++ ++i evd++++ePw+Lp+ +k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_024977119.1 12 LPPGFRFHPTDEELITHYLIHKVLDDTFSA-KAIGEVDMNRIEPWELPRLAKMGEKEWYFFCVRDKKYPTGLRTNRATDAGYWKATGKDKEIIR- 104 79*************************9.89***********8888899**********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgekt+Wv+heyrle XP_024977119.1 105 GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 138 999***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MMKDFPDEQM NLPPGFRFHP TDEELITHYL IHKVLDDTFS AKAIGEVDMN RIEPWELPRL 60 AKMGEKEWYF FCVRDKKYPT GLRTNRATDA GYWKATGKDK EIIRGKSLVG MKKTLVFYKG 120 RAPKGEKTNW VIHEYRLEGK PSIQTPPKTA KNEWVICRVF HKNSGEKKVN GSGMMLANSG 180 GNELVPAPMP PLMDSSAPFA GGRATVIKSD SVNVPCFSNP ITIQTPHNNF LNNPSYPFDP 240 SSDGNNYCFP ATQSSLPAMQ DNPESQFQFQ FQFGSGYTFP GQDQTILKGL IEDHHGFEMD 300 GEMVTGSQET GLSSEMNTEN SSVMSNLEIG KVGFQDQEAP STSVAPIDDM DCIWNY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MMKDFPDEQM NLPPGFRFHP TDEELITHYL IHKVLDDTFS AKAIGEVDMN RIEPWELPRL  60
AKMGEKEWYF FCVRDKKYPT GLRTNRATDA GYWKATGKDK EIIRGKSLVG MKKTLVFYKG  120
RAPKGEKTNW VIHEYRLEGK PSIQTPPKTA KNEWVICRVF HKNSGEKKVN GSGMMLANSG  180
GNELVPAPMP PLMDSSAPFA GGRATVIKSD SVNVPCFSNP ITIQTPHNNF LNNPSYPFDP  240
SSDGNNYCFP ATQSSLPAMQ DNPESQFQFQ FQFGSGYTFP GQDQTILKGL IEDHHGFEMD  300
GEMVTGSQET GLSSEMNTEN SSVMSNLEIG KVGFQDQEAP STSVAPIDDM DCIWNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-122	NAC family protein