PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975760.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 291aa    MW: 33289 Da    PI: 6.5668
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.9e-51101381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv++yL kk++++++    ++ e+d++ +ePw+Lp+ +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd++v++ 
  XP_024975760.1  10 LPPGFRFYPSDEELVCHYLYKKIANEDVLK-GTLVEIDLHICEPWQLPEVAKLNSSEWYFFSFRDRKYATGYRTNRATKSGYWKATGKDRTVIDP 103
                     79************************9655.78***************87788899*************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +g+lvg++ktLvfyk+rap+g+kt W+mhe+rle
  XP_024975760.1 104 kTGALVGMRKTLVFYKNRAPNGVKTGWIMHEFRLE 138
                     68889***************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MGLNDIGAKL PPGFRFYPSD EELVCHYLYK KIANEDVLKG TLVEIDLHIC EPWQLPEVAK  60
LNSSEWYFFS FRDRKYATGY RTNRATKSGY WKATGKDRTV IDPKTGALVG MRKTLVFYKN  120
RAPNGVKTGW IMHEFRLENP NIPPKEDWVL CRVFYKAKGE NSNEFNPQNN IINSYIASPN  180
TDTTYPPTTS DDNHPPSCGC YHQITTNSSH QNPPFHHHNH HHQYDYNHPS FPQFSSLKES  240
TNQTTVVCSN IKCDQNDQES GLFSDFGFEF GIPSPIGFAD GDNEDNGIVF F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.17e-93NAC family protein