PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975444.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ZF-HD

Protein Properties

Length: 362aa MW: 39153.4 Da PI: 8.3437

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	108.4	4.1e-34	63	119	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v YkeClkNhAa++Ggha+DGCgEfmps++++ + +++lkCaACgCHRnFHRre+ee XP_024975444.1 63 VAYKECLKNHAATMGGHAIDGCGEFMPSPTSSpTYPTSLKCAACGCHRNFHRREPEE 119 78**************************99999*****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDLPSPPPPT SATATTTVKT PDLETETPQS NTITKQLPPP LTNGLLKRHH KPLHHHQPPP 60 LLVAYKECLK NHAATMGGHA IDGCGEFMPS PTSSPTYPTS LKCAACGCHR NFHRREPEES 120 PYLNHPPIQH VIEYQPHHRH HPPPPQPLPP PATGANSNSP GNSPSPPPIS SSYYPSAPHM 180 LLALSAGLSS LPSETHLHNN HHPSIPTTPG SAAGGGGSNP NGKKRFRTKF TQDQKEKMHE 240 IAERVGWKMQ KRDEEMIIGF CNQIGVEKGV FKVWMHNNKT TFGNKKDFTN NGDGGSSGGG 300 GGGIDFVISR NNHQHEEGGN VNEHHNVAGN NRHDHLHLHN NNNDSYSTGG NVICTKGSSS 360 SS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDLPSPPPPT SATATTTVKT PDLETETPQS NTITKQLPPP LTNGLLKRHH KPLHHHQPPP  60
LLVAYKECLK NHAATMGGHA IDGCGEFMPS PTSSPTYPTS LKCAACGCHR NFHRREPEES  120
PYLNHPPIQH VIEYQPHHRH HPPPPQPLPP PATGANSNSP GNSPSPPPIS SSYYPSAPHM  180
LLALSAGLSS LPSETHLHNN HHPSIPTTPG SAAGGGGSNP NGKKRFRTKF TQDQKEKMHE  240
IAERVGWKMQ KRDEEMIIGF CNQIGVEKGV FKVWMHNNKT TFGNKKDFTN NGDGGSSGGG  300
GGGIDFVISR NNHQHEEGGN VNEHHNVAGN NRHDHLHLHN NNNDSYSTGG NVICTKGSSS  360
SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	2e-26	ZF-HD family protein