PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975434.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 363aa MW: 41308.9 Da PI: 5.0206

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.5	7.5e-55	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL + ++ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v XP_024975434.1 10 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLIErcRIGYeEQTEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAV 103 69**************************.9***********743433332667******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle XP_024975434.1 104 YE-KLRLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 139 .999*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MDTMDQSSCV PPGFRFHPTD EELVGYYLRK KVASQKIDLD VIRDIDLYRI EPWDLIERCR 60 IGYEEQTEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAVYEKLRLI GMRKTLVFYK 120 GRAPNGQKTD WIMHEYRLES EENGPPQEEG WVVCRAFKKR STGQTKHVEG WESNFFYDDS 180 SRVSPAMDPV DYITNQPPSS VFSQSFMCKQ ELEAAESLNF VHCDQFVQLP QLESPSLPST 240 KRPISSISLV SSSENNDQED DLAGSGGRNI NNNSKNNKEN ANKVTDWRAL DKFVASQLSH 300 EDRYGVGEGL SSSFEGKEHS DLAYMFMEGG REEEDGGGGG KLNGLLSSIS QDHCDIGICI 360 FDK

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MDTMDQSSCV PPGFRFHPTD EELVGYYLRK KVASQKIDLD VIRDIDLYRI EPWDLIERCR  60
IGYEEQTEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAVYEKLRLI GMRKTLVFYK  120
GRAPNGQKTD WIMHEYRLES EENGPPQEEG WVVCRAFKKR STGQTKHVEG WESNFFYDDS  180
SRVSPAMDPV DYITNQPPSS VFSQSFMCKQ ELEAAESLNF VHCDQFVQLP QLESPSLPST  240
KRPISSISLV SSSENNDQED DLAGSGGRNI NNNSKNNKEN ANKVTDWRAL DKFVASQLSH  300
EDRYGVGEGL SSSFEGKEHS DLAYMFMEGG REEEDGGGGG KLNGLLSSIS QDHCDIGICI  360
FDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36160.1	1e-150	NAC family protein