PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973928.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 281aa MW: 32660.1 Da PI: 7.1073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	2e-52	8	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + XP_024973928.1 8 LPPGFRFHPTDEELVMHYLCRKCASQPISV-PIIAEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK- 100 79**************************.88***********6666689*********************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy g+ap+g+kt+W+mheyrl XP_024973928.1 101 -PKPVGIKKALVFYAGKAPRGVKTNWIMHEYRL 132 .789*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MTCDNLELPP GFRFHPTDEE LVMHYLCRKC ASQPISVPII AEIDLYKFDP WQLPDMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGK PKPVGIKKAL VFYAGKAPRG 120 VKTNWIMHEY RLANVDRSAS KRNNNLRLDD WVLCRIYNKK GTLEKHHVVD NQFSEMEVET 180 KPKITPYTPV PPLHPQSSVP HHVMNDVFHF DTSESVPTLH TDSSPEHEKE VQSDPQKKDF 240 QFNYIDPFPD DSFTPPSQYY NDYQLSPLQD MFMYTLKPFP M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-112	NAC family protein