PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024973483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GATA | ||||||||
Protein Properties | Length: 230aa MW: 25325.7 Da PI: 7.7062 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.7 | 2.1e-20 | 118 | 152 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ XP_024973483.1 118 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 152 ********************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MHRSCSCDHH YQPNSFSMLF TMPPYHQHIC PYASSSSSSS PSSSSASVDC TLSLATPAST 60 RLTADNDYDL PESRHSSRFC WDFLQPDNSH SPAPPSHKTN RSGATNSSAA DSLLSRRCAN 120 CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRAAATATT VVGSGGDATE GYNQNSWMQS 180 TQKMPSCYSP AAVGSEFRFR DEVDDRDSTF LSWRLNVTDR AGLVHDFTRY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 6e-40 | GATA family protein |