PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973167.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 336aa    MW: 37616.9 Da    PI: 6.1051
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.2e-18232266135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_024973167.1 232 CLHCGSDKTPQWRTGPMGPKTLCNACGVRYKSGRL 266
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MAMEEPDYFI GDYFGVGECY FGHQKPTDII NNNNQFIIDD LLVDFPNNDD VVLNDAFFDN  60
VNGRSTDSST VTAVDSCNSS VSGGEAPFSG NISSRRFSES QFSGVEICLP YDDLAELEWL  120
SNFTQESFST DDFQNLQIIS AANKAPATDT SSSNTTPEFR LKPVVATRIN SEIFQTDVFV  180
PGKARSKRSR MAPCDWNSRI LHLKSSSTNT DIKPKPTSFK RREIPETSIV RCLHCGSDKT  240
PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTYVS AKHSNSHRKV MEIRRQKELR  300
NAHHELVNRS SVLHESNSRD DCLIDSQSGP IFMEMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-67GATA family protein