PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973005.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 349aa MW: 38840.4 Da PI: 4.8056

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.3	1.9e-16	28	117	21	128
NAM 21 kkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 + +g++l+ +v ++v+ y++ P+dLp ++++F++ kk +k g+W +tg ev+s +++ g ++tL fy+g+ap XP_024973005.1 28 NFKNGSPLPS-NVTSDVNPYHYRPSDLP-------ADLWYFCSCVKKD---------AKCGFWVETGDACEVVS-NSTILGSRTTLQFYEGQAPY 104 5555666666.78999*********9.......2344555555543.........457**********.999************* PP NAM 116 gektdWvmheyrl 128 g+ktdWvm+eyr+ XP_024973005.1 105 GRKTDWVMQEYRI 117 *********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MCPPASVPVA AEIGENWTDE GIFTSLSNFK NGSPLPSNVT SDVNPYHYRP SDLPADLWYF 60 CSCVKKDAKC GFWVETGDAC EVVSNSTILG SRTTLQFYEG QAPYGRKTDW VMQEYRITEK 120 FKDNLKDHRA LCRVFLADDN RPFTGHSIAN IDGKICINLD PKTVSHVNTR EQISTSELLE 180 NKTGMSSRRS QDFLENSSEM DCLLRGDYFE LNDLIDPGYH SSSSANSSCL TMTSDEYFDS 240 IALLQELEDD IKDQEMKDSS LKFYLSTTVK SKGVVIVPPT SVSVGNAEEC KAFDQKASKV 300 DERIGSTSNG VNATASSSDP EGTSKEGKKE DVGRTKKRKM MKYLCFMAF

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MCPPASVPVA AEIGENWTDE GIFTSLSNFK NGSPLPSNVT SDVNPYHYRP SDLPADLWYF  60
CSCVKKDAKC GFWVETGDAC EVVSNSTILG SRTTLQFYEG QAPYGRKTDW VMQEYRITEK  120
FKDNLKDHRA LCRVFLADDN RPFTGHSIAN IDGKICINLD PKTVSHVNTR EQISTSELLE  180
NKTGMSSRRS QDFLENSSEM DCLLRGDYFE LNDLIDPGYH SSSSANSSCL TMTSDEYFDS  240
IALLQELEDD IKDQEMKDSS LKFYLSTTVK SKGVVIVPPT SVSVGNAEEC KAFDQKASKV  300
DERIGSTSNG VNATASSSDP EGTSKEGKKE DVGRTKKRKM MKYLCFMAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	341	GRTKKRKMM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	5e-18	NAC family protein