PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972735.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 304aa    MW: 35162.9 Da    PI: 5.8028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-5291371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eelv +yLk+kve+ +++l +vi ++d+y++ePwd++ k    ++e++ew+fFs++d+ky+tg+r+nrat++g+Wkatg+dk+v
  XP_024972735.1   9 VPPGFRFHPTEEELVGYYLKRKVESLRIDL-DVIVDIDLYRMEPWDIEgKckLGYEEQNEWFFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAV 102
                     69****************************.99**************943432233677************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ls k++ +g++ktLvfykgrap+g k+dW+mheyrl
  XP_024972735.1 103 LS-KDRIIGMRKTLVFYKGRAPNGLKSDWIMHEYRL 137
                     **.8899***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MESLESSSVP PGFRFHPTEE ELVGYYLKRK VESLRIDLDV IVDIDLYRME PWDIEGKCKL  60
GYEEQNEWFF FSHKDRKYPT GTRTNRATAA GFWKATGRDK AVLSKDRIIG MRKTLVFYKG  120
RAPNGLKSDW IMHEYRLQSS QHAPIQEEGW VVCRAFKKPS PVQKQAFETW NDGYHLGNTN  180
NFRSFSSAND PFNPLQSFHS NQSTSSHQLP FGTDQDQQFF ANHFLIEHSN IDSPSASRSL  240
ATNEDGDYES RIDFNQYGND WKNMENLMES ELSKSSSFSY SSMPMMNGDN ELQTNHLFGC  300
FSDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-94NAC family protein