PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972132.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 570aa    MW: 63386.3 Da    PI: 8.6128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.5e-1718991299
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    + + l +p kf ++ +gk+++  t++l+ +sg++W   l    + ++ ++ +GW  Fv+++ L+ gD++vF++dg+  f  +v++f++
  XP_024972132.1 18 SFDKLKIPSKFGKHLEGKTAG--TVSLMGPSGNTWHADL--AHQTDGLFILDGWAAFVRDHFLENGDSLVFRYDGNLHF--TVQIFDQ 99
                    456799******777999766..8***************..99999988889*********************997777..9**9997 PP
2B345.91e-142483321198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + s  l +p +fa ++   ++++++++l +++g+sW+v+ i  ++ + ++++ +GW +Fv+ n+++++D+++F+l+g+ e  l+v ++r
  XP_024972132.1 248 SGSYTLNVPYQFAMAYL--PNCKVKIVLHNLKGESWTVNSIPtTRVQTSHTFCGGWLSFVRGNNINVRDVCIFELVGKCE--LRVNILR 332
                     55667999*****9996..4699*****************77566666699************************99544..4888876 PP
3B348.41.7e-15457544795
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + + + s  l +p +f  eh   +++ ++++l +++g+ W+v+ i + k ++ +++ +GW  Fv++ng++ gD+++F+l+gr e + +v+
  XP_024972132.1 457 KFNIGGSYTLKIPYQFSMEHL--PNCRTEIVLHNLKGECWTVNSIPTLKVQTlHTFCGGWMAFVRDNGIQMGDICIFELVGRCEMRVHVS 544
                     55556677899*****99996..45889****************8866666679999***********************9877755554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    
MMNARRPHFI KGFNPNISFD KLKIPSKFGK HLEGKTAGTV SLMGPSGNTW HADLAHQTDG  60
LFILDGWAAF VRDHFLENGD SLVFRYDGNL HFTVQIFDQS SCEKETAFSA ECHQDLSIFD  120
QHFGKKRERE YATMLTNMVD GVPKKARSSQ VHSECVTKYH ETTNIAEMQL GLQETMNGRC  180
EVADFLNGSE FCGSAFKDSI TPALPVSEVS PTEDELGRLS ASEADKIAQS FTSSFPHFTQ  240
VMKRFNISGS YTLNVPYQFA MAYLPNCKVK IVLHNLKGES WTVNSIPTTR VQTSHTFCGG  300
WLSFVRGNNI NVRDVCIFEL VGKCELRVNI LRVRQEAQDY EHDDVKGLAN GASHKSSGRL  360
TKKVKGNSRK TQKPTMIEGQ KVAFSIEKVK LGIAAKGTVL GSHSRTSNGK SGKPKSLQEK  420
RGSSMLGCMS MKSAPEEKIA AESFISSFPY FVRVMKKFNI GGSYTLKIPY QFSMEHLPNC  480
RTEIVLHNLK GECWTVNSIP TLKVQTLHTF CGGWMAFVRD NGIQMGDICI FELVGRCEMR  540
VHVSSVGKNV ALDYQIGHGP SNELDNGSSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-16B3 family protein