PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971339.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 1579aa MW: 172626 Da PI: 6.1795

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3.1e-09	772	813	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++d + ++G++ +++Ia+ + ++t +c+++++k XP_024971339.1 772 PWTSEEKEIFLDKFSLFGKD-FRSIASFLE-HKTVADCVEFYYK 813 8***************99.*****.*********98 PP
2	Myb_DNA-binding	29.8	1.4e-09	995	1035	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a + +G++ ++ I+r+m +R++ qck ++ XP_024971339.1 995 DWTDEEKSSFLHALRSYGKD-FSMISRCMR-TRSRDQCKVFFS 1035 6***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1579 aa Download sequence
MPPEPLPFDR KDFFKERKPS SSDPAGVVPA RWREPPTTPS SHPNNHGPFS YRLGGAGGSS 60 DFRRPISGHG KQVGGGWHAT AVESGPREDK LCRNDSSREN NHSSSGALAS ISQKDRKGGN 120 SRETTVSPHG NFHPHPDFIN SWDQLQSKDL HDKNNGGGVC TTGGQRLENE SSLGSSIDWK 180 PLKWIRSGSL SSRGSGFSHS SSSKSIGMDS LDMKIDVPPG NSTPLQSPSG DAGPCLTPRT 240 PADEVSSRKK PRLGWGEGLA KYEKKKVGPD DIVDKDAETK NGTVDGVSSL EPLLPSPNLP 300 DKSPSLNGCS ECASPATPYS FACSSSPGLE EKASTKTAAI DNDICNPCVP SCHVSHEHTE 360 GSTFNLENLE LTEVVNLSSS LNELLQSDDT SGPTSGFVRS TAMDKLQVWK ADISRTLEIT 420 ESEIDSLENE LKLLVSDVGG SCSLPAASCS LPTKCNVKNT DRISGSLPLR IIASGDTLTE 480 KADGSVELAG VEDLDRESPG TATSKFVEPF TLCDITPSDV VEQRDSSCIL HIRSENMEAK 540 CSGDNVCNDI LGVVTACGDG SQLPADGCMS LVPVSGDVHY SRTDNLYELV FDSNKVLASV 600 ASDEFRKLLP SNQWCNYTPR VTNDSQIKEK FAMRKRFLKF KERAITLKFR AFQYLWKEDL 660 RLLSVPRFGA KSQKKFELSS RMGYPDYQKH RSSIRSRFSY PDGNLSLVPT REIIDYASKL 720 LSDSHVRVHR NTLKMPSLIL DKRERATSRF ISDNGLVENP CDVELERSVI NPWTSEEKEI 780 FLDKFSLFGK DFRSIASFLE HKTVADCVEF YYKNHKSDRF QKTKKHPEFA KQGKSHSTNT 840 YLVTSGKRWN REMNAASLDM LGAASAMAAN VDGGKERRQK CPSKFYIGTS RDHKLQRVDG 900 GILERSDNLV MSCNERETAA ADVLAGICGS ISSEALSSCI TSLADPGDVY HQDRICQKLG 960 GSSTRQPATP DGSQNDVDEE TCSDDSCGGE MGPSDWTDEE KSSFLHALRS YGKDFSMISR 1020 CMRTRSRDQC KVFFSKARKC LGLDAIYLER GKEGTMGGNR GGGSDHDDTC MVDSGSVISC 1080 DKSSSEFKVD VEDLHSSDSK QELAESDRIV ASRESEFGSE NLVSHGCEAE NKPEIDLVGG 1140 KNSNGNFEEA ADSEATGAAN IEEASRNTYS EGSVRETNDQ ASASGAKAEV DTVDKVSSKI 1200 CREEIQESEH QLASWNSNTS EVRALNACSA EDLNSASHYS RGSSLDLSID PGNSLELNGV 1260 ENPCEGNNGF LASNLVCRDP IVSPHRKTLS QDDTSSGSLS FRKSLSQRSS STDGYHLHLP 1320 KHSLMDCVES SHILRGYPVT VSTNKGVSGS LGQNEFKLDK SLPLEQCLPR DCSLQMCTSS 1380 LSHEQRQGEV GKPGDVKLFG QILTNPLSNG KFEKPNGRKS FNLKFDNRSS DRNLASLDLD 1440 NHGFGVKKNV PLRSYGFWDG NRIQTGFSSL PPDSSVLLAK YPAAFGNTTK LEESHSFVNE 1500 QLKGFHQSRE VNRCSNYHNA YMSQEGIQPF TVDKLLLSEI PRRKDSEGGR VMVSDPVAAI 1560 RMHYAKTTEQ YKNGNSNSR

Sequence ? help Back to Top

Protein Sequence Length: 1579 aa Download sequence

MPPEPLPFDR KDFFKERKPS SSDPAGVVPA RWREPPTTPS SHPNNHGPFS YRLGGAGGSS  60
DFRRPISGHG KQVGGGWHAT AVESGPREDK LCRNDSSREN NHSSSGALAS ISQKDRKGGN  120
SRETTVSPHG NFHPHPDFIN SWDQLQSKDL HDKNNGGGVC TTGGQRLENE SSLGSSIDWK  180
PLKWIRSGSL SSRGSGFSHS SSSKSIGMDS LDMKIDVPPG NSTPLQSPSG DAGPCLTPRT  240
PADEVSSRKK PRLGWGEGLA KYEKKKVGPD DIVDKDAETK NGTVDGVSSL EPLLPSPNLP  300
DKSPSLNGCS ECASPATPYS FACSSSPGLE EKASTKTAAI DNDICNPCVP SCHVSHEHTE  360
GSTFNLENLE LTEVVNLSSS LNELLQSDDT SGPTSGFVRS TAMDKLQVWK ADISRTLEIT  420
ESEIDSLENE LKLLVSDVGG SCSLPAASCS LPTKCNVKNT DRISGSLPLR IIASGDTLTE  480
KADGSVELAG VEDLDRESPG TATSKFVEPF TLCDITPSDV VEQRDSSCIL HIRSENMEAK  540
CSGDNVCNDI LGVVTACGDG SQLPADGCMS LVPVSGDVHY SRTDNLYELV FDSNKVLASV  600
ASDEFRKLLP SNQWCNYTPR VTNDSQIKEK FAMRKRFLKF KERAITLKFR AFQYLWKEDL  660
RLLSVPRFGA KSQKKFELSS RMGYPDYQKH RSSIRSRFSY PDGNLSLVPT REIIDYASKL  720
LSDSHVRVHR NTLKMPSLIL DKRERATSRF ISDNGLVENP CDVELERSVI NPWTSEEKEI  780
FLDKFSLFGK DFRSIASFLE HKTVADCVEF YYKNHKSDRF QKTKKHPEFA KQGKSHSTNT  840
YLVTSGKRWN REMNAASLDM LGAASAMAAN VDGGKERRQK CPSKFYIGTS RDHKLQRVDG  900
GILERSDNLV MSCNERETAA ADVLAGICGS ISSEALSSCI TSLADPGDVY HQDRICQKLG  960
GSSTRQPATP DGSQNDVDEE TCSDDSCGGE MGPSDWTDEE KSSFLHALRS YGKDFSMISR  1020
CMRTRSRDQC KVFFSKARKC LGLDAIYLER GKEGTMGGNR GGGSDHDDTC MVDSGSVISC  1080
DKSSSEFKVD VEDLHSSDSK QELAESDRIV ASRESEFGSE NLVSHGCEAE NKPEIDLVGG  1140
KNSNGNFEEA ADSEATGAAN IEEASRNTYS EGSVRETNDQ ASASGAKAEV DTVDKVSSKI  1200
CREEIQESEH QLASWNSNTS EVRALNACSA EDLNSASHYS RGSSLDLSID PGNSLELNGV  1260
ENPCEGNNGF LASNLVCRDP IVSPHRKTLS QDDTSSGSLS FRKSLSQRSS STDGYHLHLP  1320
KHSLMDCVES SHILRGYPVT VSTNKGVSGS LGQNEFKLDK SLPLEQCLPR DCSLQMCTSS  1380
LSHEQRQGEV GKPGDVKLFG QILTNPLSNG KFEKPNGRKS FNLKFDNRSS DRNLASLDLD  1440
NHGFGVKKNV PLRSYGFWDG NRIQTGFSSL PPDSSVLLAK YPAAFGNTTK LEESHSFVNE  1500
QLKGFHQSRE VNRCSNYHNA YMSQEGIQPF TVDKLLLSEI PRRKDSEGGR VMVSDPVAAI  1560
RMHYAKTTEQ YKNGNSNSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-142	MYB family protein