PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971217.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ZF-HD
Protein Properties Length: 274aa    MW: 30178.9 Da    PI: 8.4071
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.4e-3268122459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     vrY+eClkNhA ++Gg+ +DGCgEfmps g++gt +alkCaAC+CHRnFHR+e++ 
  XP_024971217.1  68 VRYRECLKNHALNIGGNITDGCGEFMPS-GDDGTLEALKCAACNCHRNFHRKETTI 122
                     89*************************9.999********************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MALSGTDKEI RTQTSSLPYN NHHLIRESSS ETMDHIHGSD PDRFGGSGAS VTPISVGSRL  60
LKSPPPPVRY RECLKNHALN IGGNITDGCG EFMPSGDDGT LEALKCAACN CHRNFHRKET  120
TIATPTAGPF LQLPPPLPSP SSLFNHHQRT STISLHHHHH ANWAPSINAP PVKIAVGGSG  180
AATESSSEEL HFTAAAPYGV VKRRFRTKFT QDQKEKMLEF AEKVGWRIPR EDDPEVQRFC  240
AEVGVKRQVL KVWMHNNKVI SGKKQVQDSN ETID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.19e-58ZF-HD family protein