PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024970069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GATA | ||||||||
Protein Properties | Length: 252aa MW: 27848 Da PI: 5.8072 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.7 | 2.4e-16 | 168 | 205 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cgt + Tp++Rrgp g++tLCnaCGl+++ +g++ XP_024970069.1 168 CAHCGTCSmdTPMMRRGPAGPRTLCNACGLFWANRGTM 205 **********************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MYGKSSMSEF GEIPPEEVPS HPGGVRNGVD SMDDRNVSYG LEDVDGGSDG ICDFEGIDGV 60 VYSDLAIMPR GDAGDQLTLS YCGQVYVFDN VTTDKVQKVF LHLGGCEFPV GQQGAESAYQ 120 NPRDLDYPGR CSDPRRAASL SRFRQKRKER CFEKKIRYNV RQEVARRCAH CGTCSMDTPM 180 MRRGPAGPRT LCNACGLFWA NRGTMRDLSK KSNDQSSSLA EQVYKCKDEY NGSNFGTTMP 240 RCSNDAELGF GN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 1e-51 | GATA family protein |