PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024969764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | SRS | ||||||||
Protein Properties | Length: 253aa MW: 27190.3 Da PI: 8.034 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 203.5 | 6.1e-63 | 22 | 186 | 4 | 155 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.............aeaaskrkrelkskkqsa 85 g ++CqdCGnqakkdC+h+RCRtCC+srg+ C+thvkstWvpaakrrerqqql +++ ++ s+ ++++kr+r+++++ + XP_024969764.1 22 GVINCQDCGNQAKKDCQHMRCRTCCRSRGLPCKTHVKSTWVPAAKRRERQQQLDLSTQPQNVSNqplslmmrsgvsgLDQNPKRPRDDHQQIAGD 116 6689*************************************************99988887777799*****99988778889999885554444 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 + ++++ + + ++P+e++s+ vfrcvrvs+ d+ ee+laYqtavs+gGhvf+GiLyd+G++++ XP_024969764.1 117 GGVVIPTIHHHNITPSGFHFPAELNSPVVFRCVRVSGTDETEEQLAYQTAVSVGGHVFNGILYDHGPDDQ 186 4443333444455666778************************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MRPADYVIGG GSGSGSGGGS GGVINCQDCG NQAKKDCQHM RCRTCCRSRG LPCKTHVKST 60 WVPAAKRRER QQQLDLSTQP QNVSNQPLSL MMRSGVSGLD QNPKRPRDDH QQIAGDGGVV 120 IPTIHHHNIT PSGFHFPAEL NSPVVFRCVR VSGTDETEEQ LAYQTAVSVG GHVFNGILYD 180 HGPDDQGQYN NPIGESSSVA GAQHEHVNLV TRATTTTTRI NPAVTILDPS SMYTTPLSTY 240 LAGGTQFFPP PRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-59 | SRS family protein |