PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969072.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 370aa MW: 40619.3 Da PI: 4.2868

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61.6	2.6e-19	20	118	12	128
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktL 106 +e+v++ L + +g +l+l +v+++vd y++ P++Lp e+ wyf s kk +++g+W +tg+ e++s ++ +gl+ktL XP_024969072.1 20 DEVVCKSLVQFKSGCPLPL-NVLPDVDPYECMPSNLP------ENMWYFCSG-TKK---------DAEHGFWMSTGEACEIYS-TSVFTGLRKTL 96 5788888888888888999.89************9......355665554.443.........3468**********.9999*** PP NAM 107 vfykgrapkgektdWvmheyrl 128 fy+g+ap+g+kt+W+m+ey+ XP_024969072.1 97 QFYEGQAPNGQKTNWMMQEYTT 118 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MCPPASVTAP AIELDNYWTD EVVCKSLVQF KSGCPLPLNV LPDVDPYECM PSNLPENMWY 60 FCSGTKKDAE HGFWMSTGEA CEIYSTSVFT GLRKTLQFYE GQAPNGQKTN WMMQEYTTTE 120 KYSNKLDCRA LCRVFLADDK RSSRRLSESE LLEKRMDDGT GASAMANTSP DPPSAMADTS 180 PDPPSAMADT SPDQPSGMGN NRSPDWPPEN IPDREYVLMG DYLELDDLAA SISHSSSSAD 240 SSCMTMTSEE FFDPVALMRE LGDDIVHQEV QDSSVKLNLS APTKLKEVIM DPTTLGFCDD 300 GKECKPSITQ ASKTDDTPQN EPGDDRKEST SNGINTTAAA AASSSSEEKK DRGGGTKKRK 360 VMKYLCFLAF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MCPPASVTAP AIELDNYWTD EVVCKSLVQF KSGCPLPLNV LPDVDPYECM PSNLPENMWY  60
FCSGTKKDAE HGFWMSTGEA CEIYSTSVFT GLRKTLQFYE GQAPNGQKTN WMMQEYTTTE  120
KYSNKLDCRA LCRVFLADDK RSSRRLSESE LLEKRMDDGT GASAMANTSP DPPSAMADTS  180
PDPPSAMADT SPDQPSGMGN NRSPDWPPEN IPDREYVLMG DYLELDDLAA SISHSSSSAD  240
SSCMTMTSEE FFDPVALMRE LGDDIVHQEV QDSSVKLNLS APTKLKEVIM DPTTLGFCDD  300
GKECKPSITQ ASKTDDTPQN EPGDDRKEST SNGINTTAAA AASSSSEEKK DRGGGTKKRK  360
VMKYLCFLAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	3e-16	NAC family protein