PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968438.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 148aa    MW: 16769.6 Da    PI: 10.5914
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.8e-183569135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+tt TplWR gp g+k+LCnaCG++y kk++
  XP_024968438.1 35 CTDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 69
                    ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MDLKDKSSVV AQEEEEIITE SGSSALISSN QTKCCTDCHT TRTPLWRGGP AGPKSLCNAC  60
GIKYNKKRRA VMVGFDKNGR RTSKSAKRKG DLKMKMKMKM RLMMINKKQE QRKRSSYERG  120
KPWWNKLREE EQAAILLMAI SCGGSLYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16693KKRRAVMVGFDKNGRRTSKSAKRKGDLK
26695KKRRAVMVGFDKNGRRTSKSAKRKGDLKMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-24GATA family protein