PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024968394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GATA | ||||||||
Protein Properties | Length: 181aa MW: 20417.9 Da PI: 10.2803 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63 | 3.5e-20 | 62 | 95 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+t+kTplWR+gp+g+k+LCnaCG++yrkk+ XP_024968394.1 62 CVDCKTSKTPLWRSGPSGPKSLCNACGIRYRKKK 95 ********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MWLRHHSPPP PFLLLCLSTY SSILIFHITF WFRGSTTSNR KKKKMESMCC GETISKVDEK 60 ICVDCKTSKT PLWRSGPSGP KSLCNACGIR YRKKKSISGS EKKKKKKEKQ PPSSPTSSSS 120 CCSTVGEDDC DLRRIKLVVL LQSQRERCGM KKVRRNDYNK LGEVEQAAFL LMSLSCGSSQ 180 L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 107 | RKKKSISGSEKKKKKK |
2 | 93 | 108 | RKKKSISGSEKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 5e-18 | GATA family protein |