PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024967174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GRF | ||||||||
Protein Properties | Length: 339aa MW: 38934.7 Da PI: 8.6178 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.8 | 5.2e-25 | 111 | 154 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_024967174.1 111 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 154 79***************************************998 PP | |||||||
2 | QLQ | 50.4 | 6.7e-18 | 47 | 78 | 6 | 37 |
QLQ 6 aQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Q+q+L++Q+l+yKy+++++P+Pp+Ll+ i++ XP_024967174.1 47 SQWQELEHQALVYKYMISGMPIPPDLLFSIKR 78 7***************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
MWNIILGGGT NGSNLQVGNV KTRREKTKAL LVRTVLCHFN ASIRIKSQWQ ELEHQALVYK 60 YMISGMPIPP DLLFSIKRSL DPSTKLILHH QSPHQSIGWN CFQMGFGRKI DPEPGRCRRT 120 DGKKWRCSKE AYPDSKYCER HMHRGRNRSR KPVEVNLSST QPLSMCNKPP AFLYPQLSSS 180 SCSRPVLSSH QDRMFMLESR AYYSHSEKDQ SYGMKEDQAD EHPFFSENSC GTMSASMADS 240 WHLEPLAINN SSSSSSKQQT FSDYKNGYSY DLQLQNTPKQ QQQNQDQLGL EIERKDEPQK 300 MMHHFFDESP RDANDSSSTQ LSISIPSCAH DFFLTHNDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-57 | GRF family protein |