PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963329.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SRS

Protein Properties

Length: 414aa MW: 43371.9 Da PI: 8.8031

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.4	1.3e-66	200	366	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssa 94 t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++++++ a+a +++a+k++r +++++++++s+t++s++ XP_024963329.1 200 STMTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMTSTTTGGGGAAAgssaSTSATKKPRLTSQTTATTASHTSTSNT 294 579********************************************99888877655544445558889999999999999******* PP DUF702 95 eskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++ ss lP +v+++avf+cvrv++v+dg++e+aYq+ v+igGhvfkG+LydqG+e+ XP_024963329.1 295 TPPRSFNSSSshhhqdasfmqsLPGQVRAPAVFKCVRVTAVEDGDDEYAYQACVKIGGHVFKGFLYDQGAET 366 *9999999*******************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MSDIVVEKRI QYALQPQIND AEDLLNKRSS RLQPSDSGAF ADWVANPSSS RPSEHDLSLG 60 FNAGPASAVG GSTGIWSSSV SAAARHINYG AEIGMLGLRD VFVVAPSSHH LSDHAHAHSL 120 NTPISNATAA AATATALGVG VIPLLTATTS SNTTNTTTAN NNNSIQFWQP QNQHNYLKKP 180 MIPDHGFLHG GGSASLTSGS TMTCQDCGNQ AKKDCSHRRC RTCCKSRGFD CATHVKSTWV 240 PAARRRERQL MTSTTTGGGG AAAGSSASTS ATKKPRLTSQ TTATTASHTS TSNTTPPRSF 300 NSSSSHHHQD ASFMQSLPGQ VRAPAVFKCV RVTAVEDGDD EYAYQACVKI GGHVFKGFLY 360 DQGAETRDQT NIPNLSELHL GGGGRRNVGG SLISPPLNHP STSVYGSSGG GLLG

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MSDIVVEKRI QYALQPQIND AEDLLNKRSS RLQPSDSGAF ADWVANPSSS RPSEHDLSLG  60
FNAGPASAVG GSTGIWSSSV SAAARHINYG AEIGMLGLRD VFVVAPSSHH LSDHAHAHSL  120
NTPISNATAA AATATALGVG VIPLLTATTS SNTTNTTTAN NNNSIQFWQP QNQHNYLKKP  180
MIPDHGFLHG GGSASLTSGS TMTCQDCGNQ AKKDCSHRRC RTCCKSRGFD CATHVKSTWV  240
PAARRRERQL MTSTTTGGGG AAAGSSASTS ATKKPRLTSQ TTATTASHTS TSNTTPPRSF  300
NSSSSHHHQD ASFMQSLPGQ VRAPAVFKCV RVTAVEDGDD EYAYQACVKI GGHVFKGFLY  360
DQGAETRDQT NIPNLSELHL GGGGRRNVGG SLISPPLNHP STSVYGSSGG GLLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	6e-73	SRS family protein