PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962547.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CPP

Protein Properties

Length: 902aa MW: 98348 Da PI: 7.5371

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.3	9.7e-16	492	531	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCkkskClk+YC+Cfaag +C+ C+C++C+N+ e XP_024962547.1 492 DCKHCNCKKSKCLKLYCDCFAAGIYCAGPCSCQGCFNRPE 531 689**********************************876 PP
2	TCR	50.1	5.6e-16	580	618	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+CedC+N XP_024962547.1 580 RHKRGCNCKKSMCLKKYCECYQANVGCSDGCRCEDCQNI 618 589***********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MGSPENPNES TTAIIASTTS PQSAAFQIVV DVCLCMVLNL EVEPPSALED SPIFNYINNL 60 SPIKPVKGTS ALQVFSGLNS PPLVFTSPRI HAHQQSAELK RSQCHISSHS ELSRHDRTGN 120 ITTGAVEPER LTSHMSDLTP LANSSLTNFE DDLPKVADSM NPEGSMETYA NEDGKGSNVV 180 ANNASATFVE QAKRDHEGNL SSCPKSIEND GKTSSCPKSN SCQKVPANVS VDNMSVQKYD 240 QRVAQHMQPV FRYKDCGKRI ESGIADESIV TMTERHSKVG QSQLGKRRRL QFETAQEKIV 300 ENDPGSENPN TAGKSEILES SCADISSTSH NIQPTGSTQS TCPLSLSQNT RNASLTVSKP 360 SGIGLHLNSI VNARPLACPL NVSVKPTDVT YSSAGRKKSI SITSHMQNNM QCTSFSSNSN 420 LVENVSATSE EYTHETPPSC PSYNNAKSMK IIEHEDKFDP GSLNSGQTGR VDELDRSNPK 480 KKRKKTESTD DDCKHCNCKK SKCLKLYCDC FAAGIYCAGP CSCQGCFNRP EYEDTVLETR 540 QQIESRNPLA FAPKIIHRLT QPPRSQIVED GDQLTPLAGR HKRGCNCKKS MCLKKYCECY 600 QANVGCSDGC RCEDCQNIYG KKGVSGTIRE MGMEVINEKL NCSFDDKMKV GSIRSRSSLS 660 EFQKPHNLTP QTPSFQCSNH GNDASKARVL PGRYLPSPES ESTFYPSYVS TPRSPKNSAS 720 FDMIMEASNM NSEMVPFGQD LYPSVEFMDE CSPGCTTSGT ATGHLTSMGD WSNSSRAQLL 780 PPGGLSFSSL CPRRSSVTPV TLFGGTKLTD SQQKSIDNYD DDTPNILKDS SIQPNKVKVT 840 SPNKKRISPP RIRLHELGSN SLKSGRKFIL KAVPSFPPLT SCINSKDNTG RISNDPPADD 900 TL

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MGSPENPNES TTAIIASTTS PQSAAFQIVV DVCLCMVLNL EVEPPSALED SPIFNYINNL  60
SPIKPVKGTS ALQVFSGLNS PPLVFTSPRI HAHQQSAELK RSQCHISSHS ELSRHDRTGN  120
ITTGAVEPER LTSHMSDLTP LANSSLTNFE DDLPKVADSM NPEGSMETYA NEDGKGSNVV  180
ANNASATFVE QAKRDHEGNL SSCPKSIEND GKTSSCPKSN SCQKVPANVS VDNMSVQKYD  240
QRVAQHMQPV FRYKDCGKRI ESGIADESIV TMTERHSKVG QSQLGKRRRL QFETAQEKIV  300
ENDPGSENPN TAGKSEILES SCADISSTSH NIQPTGSTQS TCPLSLSQNT RNASLTVSKP  360
SGIGLHLNSI VNARPLACPL NVSVKPTDVT YSSAGRKKSI SITSHMQNNM QCTSFSSNSN  420
LVENVSATSE EYTHETPPSC PSYNNAKSMK IIEHEDKFDP GSLNSGQTGR VDELDRSNPK  480
KKRKKTESTD DDCKHCNCKK SKCLKLYCDC FAAGIYCAGP CSCQGCFNRP EYEDTVLETR  540
QQIESRNPLA FAPKIIHRLT QPPRSQIVED GDQLTPLAGR HKRGCNCKKS MCLKKYCECY  600
QANVGCSDGC RCEDCQNIYG KKGVSGTIRE MGMEVINEKL NCSFDDKMKV GSIRSRSSLS  660
EFQKPHNLTP QTPSFQCSNH GNDASKARVL PGRYLPSPES ESTFYPSYVS TPRSPKNSAS  720
FDMIMEASNM NSEMVPFGQD LYPSVEFMDE CSPGCTTSGT ATGHLTSMGD WSNSSRAQLL  780
PPGGLSFSSL CPRRSSVTPV TLFGGTKLTD SQQKSIDNYD DDTPNILKDS SIQPNKVKVT  840
SPNKKRISPP RIRLHELGSN SLKSGRKFIL KAVPSFPPLT SCINSKDNTG RISNDPPADD  900
TL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	290	KRRRL
2	481	485	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-58	CPP family protein