PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962043.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 286aa    MW: 31794.4 Da    PI: 6.5017
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.5e-18188222135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_024962043.1 188 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 222
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDIYGMSSSG QDFSGVDELL DFSNDHGDLF GASATDILHQ HHNVTAASTA TGCHFQYGVN  60
NDDSNNYNND IATNYHHHST DFTDDLCVPS EDVAELEWLS NFVHDSFSDF PANNLAGTIN  120
YRPENTSFHS RSRSKRTRAP TNSTSWTSTT PLPTASISEK QTTKLETYSS PTSSSSDTTS  180
EAGLVRRCTH CASEKTPQWR TGPLGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTQHS  240
NSHRKVMELR RQKEMVHGQQ QQQSPTSEYQ LYGGGHHHNH NNYEVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136RSRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-69GATA family protein