PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960812.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SRS

Protein Properties

Length: 349aa MW: 36449 Da PI: 8.3509

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.3	1.4e-66	127	285	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++++ ++ + +sa+++ +k++r + ++++++s+t++s++++++ XP_024960812.1 127 STMTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMTSTGTA-TVSSASTSGPKKPRLT--SHTTTTSHTSTSNTTPPR 218 579********************************************877766644.4455677888888865..8999999******* PP DUF702 99 eletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++tss lP +v+++avf+cvrv++v+dg++e+aYq++ +igGhvfkG+LydqG+e+ XP_024960812.1 219 SFDTSSshrqdanfkesLPGQVRAPAVFKCVRVTAVEDGDDEYAYQASATIGGHVFKGFLYDQGIET 285 999*******************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGMLGLRDVF VVAPSSHHNL ADHHTHPHSI NASVVNATAA TALGVGVGVI PLLSASPCLN 60 VEEDMLNNRG GGRSSNTNNN SNFSIQFWQQ HPQTQPHNYL NKPIISDHGF LQGSVGGVGG 120 STSTSGSTMT CQDCGNQAKK DCSHRRCRTC CKSRGFDCAT HVKSTWVPAA RRRERQLMTS 180 TGTATVSSAS TSGPKKPRLT SHTTTTSHTS TSNTTPPRSF DTSSSHRQDA NFKESLPGQV 240 RAPAVFKCVR VTAVEDGDDE YAYQASATIG GHVFKGFLYD QGIETRDHTN FPNFSELHLG 300 GGGGGGGGGG GAGRNVGGSS SSPLLDPSEV YGSSGGGMLA GSTYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGMLGLRDVF VVAPSSHHNL ADHHTHPHSI NASVVNATAA TALGVGVGVI PLLSASPCLN  60
VEEDMLNNRG GGRSSNTNNN SNFSIQFWQQ HPQTQPHNYL NKPIISDHGF LQGSVGGVGG  120
STSTSGSTMT CQDCGNQAKK DCSHRRCRTC CKSRGFDCAT HVKSTWVPAA RRRERQLMTS  180
TGTATVSSAS TSGPKKPRLT SHTTTTSHTS TSNTTPPRSF DTSSSHRQDA NFKESLPGQV  240
RAPAVFKCVR VTAVEDGDDE YAYQASATIG GHVFKGFLYD QGIETRDHTN FPNFSELHLG  300
GGGGGGGGGG GAGRNVGGSS SSPLLDPSEV YGSSGGGMLA GSTYGNPIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	3e-65	SRS family protein