PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960152.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 308aa    MW: 33927.3 Da    PI: 8.3234
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.8e-18228262135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C + kTp+WR gp g ktLCnaCG++y++ +l
  XP_024960152.1 228 CSHCLVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 262
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MIQMDCLQSQ SKPTFKFNHL PPSFSDDFLP LNADDFFVDG LLDFSTDAAF VQDDDNSQLL  60
KHPDDTNNQK PSSVSPIKTD NHDRTTVPET ELCLPVDDVA DLEWVSQFVD DSFSGGYLLT  120
CAEGKLPERK LETETVTLVA VNPSFKSMVY KKARSKRSRT GGRVWSLRSS TPLTDSSASS  180
SSSSSCTSKP LLALEEILGK APVKRQKKKK PAAMVETTGS GQPQPRRCSH CLVQKTPQWR  240
AGPLGAKTLC NACGVRYKSG RLLPEYRPAC SPTFSSEVHS NNHRKVLEMR RKKEEAVDGG  300
VSLPVQSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-57GATA family protein