PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959890.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 321aa    MW: 36412.9 Da    PI: 8.8182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.1e-53161411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeel+v+yL++kv+g+++ l ++i +vd+yk++Pw+Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s 
  XP_024959890.1  16 LPPGFRFYPTDEELMVKYLCRKVAGHDFAL-QIIGDVDLYKFDPWELPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIIS- 108
                     79*************************999.89***************8777899**************************************9. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  XP_024959890.1 109 EGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRL 141
                     999****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGVPVPVTDP MTQLKLPPGF RFYPTDEELM VKYLCRKVAG HDFALQIIGD VDLYKFDPWE  60
LPSKAMFGEK EWYFFSPRDR KYPNGSRPNR VAGSGYWKAT GTDKVIISEG RKVGIKKALV  120
FYVGKAPKGS KTNWIMHEYR LSEPPKKNNS SRLDDWVLCR IYKKNSAAEK TISGGPSTDQ  180
SHNSSSSSSS QFDDVLDSLP AIDDKFLNFP ANNTMKSFQE EDQKVDVQRY DYGNYEWTTN  240
VTVFGSQDGI NNNNPPNAIP IDPTFNMHMK YGRSPESEAV TGIRSQRMEN SGYFFSQSLM  300
NTTDPFAIRY PTQPSSSGYR L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-104NAC family protein