PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024959638.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 338aa MW: 37624.7 Da PI: 8.5695 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.1 | 1.4e-19 | 198 | 231 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + XP_024959638.1 198 CSDCNTTKTPLWRSGPQGPKSLCNACGIRQRKAR 231 *******************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence |
MTPIYLNSSS NDQYNEHQFL SPTDHRNEHQ FLSPHSQASS SSNSLTCHLF FNPTIISDQD 60 GGFHSEPQPS QLESDTFGSQ AYDDHCAANQ DEISKNNGGS GLKFSLWKRE SSYDTNSNDE 120 NRVKWMSSKM RVMLKMKKSD HPKKLNTLQS TAATEMKLAE DHHDHKEPTS SPMEETANSN 180 SNSINSTSSN NTNPIRVCSD CNTTKTPLWR SGPQGPKSLC NACGIRQRKA RKAMAAAAET 240 NKNTLINDKP TSLKATKILH KDHKKPNNGH VKKRQYSKQT NTMNPASPSS SSPATKNCVE 300 EFLVSLSKNL AFHRVFPQDE KEAAILLMAL SCGYAHHE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-17 | GATA family protein |