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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU28201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 537aa MW: 60109.6 Da PI: 5.9662 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.7 | 9.1e-11 | 119 | 165 | 4 | 54 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 G+r++k +gr++AeI dp + k+++lg+f+t e+A +a+ + ++e PHU28201.1 119 VGIRRRK-SGRYFAEISDPI----QhKKVYLGTFDTIEQASQAYFSKKSEFE 165 69**999.7*********82....46*****************987776665 PP | |||||||
2 | AP2 | 32.7 | 1.9e-10 | 210 | 253 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 G+r++k +gr++AeI dp + k+++lg+f+t e+A +a+ + PHU28201.1 210 VGIRRRK-SGRYFAEISDPI----QhKKVYLGTFDTIEQASQACLSKKS 253 69**999.7*********82....46**********7777766655444 PP | |||||||
3 | AP2 | 29.4 | 2e-09 | 319 | 363 | 5 | 52 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 GV k+ gr+ +eI p + k+++lg+f+taeeA a+ +++ PHU28201.1 319 GVNKSKTIGRYTSEITNPI----TkKKIWLGTFDTAEEASHAYQSKKLE 363 9*************99972....36*****************9776665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence |
MRGKYNYEST SPISKKRVWL DTFGTAEEAS RVDHHSKKLE FDVMLSHSEQ HGRSEVDASI 60 SNADNVGIDR RIDCHEIGTG EEASRVFNSC LMANVHGAES SDECNITRSC DPKDKIRLVG 120 IRRRKSGRYF AEISDPIQHK KVYLGTFDTI EQASQAYFSK KSEFENLRKG NKDDKPKKNC 180 DQIQQPESPS VVETLNTATS CDPKDKIRLV GIRRRKSGRY FAEISDPIQH KKVYLGTFDT 240 IEQASQACLS KKSKFEKLRQ GNKDLSCADS SLLSPSNIDK DNKTEPEPPS VVASLDTAVS 300 ASGRDKRIGS RKRKAHTVGV NKSKTIGRYT SEITNPITKK KIWLGTFDTA EEASHAYQSK 360 KLEFQNLVKA KQQQCTKAQT HSEQDAEKEK SVNVEQGHEN VNCEPFQLES YVGSPDVDVL 420 LSNASSGETV QSTDSDKIGN TEEAFHVYQS KKLDDSESPQ KVELQSNTQT DSSAGEKQEG 480 QEDDEDLWMG EWMQLPGNRA VKFSLKLGLP IIDNYGYLLG EFSSLDDLSI CETEDDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 125 | RLVGIRRRK |
2 | 208 | 216 | RLVGIRRRK |
3 | 213 | 254 | RRRKSGRYFAEISDPIQHKKVYLGTFDTIEQASQACLSKKSK |
4 | 311 | 341 | RKRKAHTVGVNKSKTIGRYTSEITNPITKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.1 | 3e-13 | ERF family protein |