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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMP11696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | AP2 | ||||||||
Protein Properties | Length: 672aa MW: 74486.4 Da PI: 7.1467 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 1.9e-12 | 321 | 377 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g OMP11696 321 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 377 78*******************87776664446655.77******************98 PP | |||||||
2 | AP2 | 45.6 | 1.7e-14 | 422 | 471 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OMP11696 422 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 471 9***************988532...5************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence |
MKSMSSNDDN NNNNNNTNWL GFSLSPQMKM EVTNHQTQSS SSSVAVAAAA AGSVTTAIPS 60 SSFFQSPSSS HHLNYGLYYG VEGTEYSNFP VMPLKSDGSL CLMEALGRSQ PQAMVPTTST 120 PKLEDFFGVA TMGTHHYESS DREAMALSLD SIYYHQQNAQ QANNNQNSQQ QIHQVQQYQQ 180 YYSGFRNQDM LLGEETRQTH VPTMADDDVA SASTGLKTWV SRNYPTTEHA MHQKMMGCCM 240 GDNNGAAESG SVGAMGYGDL QSLSLSMSPG SQSSCVTNSH QISPPVNEYV AMETKKRGPE 300 KVDQKQIVHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQGGYDM 360 EEKAARAYDL AALKYWGPST HINFPLENYQ KELEGMKNMT RQEYVAHLRR KSSGFSRGAS 420 MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GVNAVTNFDI 480 TRYDVERIMA SNTLLAGELA RRNKDIGPGN EAISHNLLSE SSNGAETNIT PKNNIENQPD 540 WKMVLYQSSQ QLDQQKQSSM IENYKAQTFS LAPENNVVGI DTMNSGQRDL DDSSKMGTHH 600 FSNASSLVTS LSSSREESPD RSSLPIPFAM PPPGSKLFTT ANSAVNSWIP SAQLRPALSM 660 PHMPVFAAWT DA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-129 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OMP11696 |