PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP02240

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 832aa MW: 92876.1 Da PI: 6.0862

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP02240	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.5	3.1e-29	764	822	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D ++WrKYGqK++kgs++prsY +C+s gCp++k+vers edp+++++tYeg+H+h+k OMP02240 764 DDFSWRKYGQKPIKGSPYPRSYSKCSSLrGCPARKHVERSLEDPNMLVVTYEGDHKHSK 822 99**********************998**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence
MGINSLSVGG FSDPLDLKLS LSLGVANRTK EDKKRSWCEK KPSTFSGIVI DLEESSERTS 60 DSGGKHVSQV TISSDPITSR SLKKDLYHDS AESSSFVADS KCFQDQNYSN HGVKRHQNLP 120 CENFLARKKQ FISHGLRHLD LNEVQLDDTS CHLHDTVAPP STASSSVDFI ELVSSSQETL 180 CPTTFLTKEK EFSNETFEML EQNGDVNLAL MNFNTKDRRT EIQARDSELC GRNECERSLI 240 DPAIHISEDL GSHNRKSKDG KDELMPELET IPALGSNSAC IVARQVGCEK TEAGDTVLLC 300 SDQIQKMIED EHPENSPASG KSSCISDNDS RTAMTMESEI EPYKLNVPAS DEFSGIHGGS 360 HIADTLSGEQ DQRSSDSNEI RPESYNKGEE SAGVDDLIQI AAESLIHMSL ETSPCYQESS 420 IQAGSDDLDN EDKEQPQCSC DSFELMTLKL TESSVDDYSV TSKAFEISDS ERKDCGIKLK 480 RGRRMKDFQR DILPGLASLS RHEIREDINI LEGVLRSREY KKMRAKMGNG ESWCTPNHMT 540 EASGICVSMN PRWEFKVHEV AQSSFRRANY LFNCISDQNQ KRSIEDLSLM AQETVNGFRK 600 LLTLLDDGSG SKQSSECKRI RKGPLLKSHT INPTELMESS SSQPQILRQM ISNQPKTAGM 660 NYMIPRNVVV LPNLIMGLQL HHSSILPQSM EKKIILPKTS SVSDQDDQSC LFLSKRRDHD 720 EEEASTKCAA STGGCHCSKR RKLRIKKTIR VPAVSNKLSD IPPDDFSWRK YGQKPIKGSP 780 YPRSYSKCSS LRGCPARKHV ERSLEDPNML VVTYEGDHKH SKITFQAPNL IV

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence

MGINSLSVGG FSDPLDLKLS LSLGVANRTK EDKKRSWCEK KPSTFSGIVI DLEESSERTS  60
DSGGKHVSQV TISSDPITSR SLKKDLYHDS AESSSFVADS KCFQDQNYSN HGVKRHQNLP  120
CENFLARKKQ FISHGLRHLD LNEVQLDDTS CHLHDTVAPP STASSSVDFI ELVSSSQETL  180
CPTTFLTKEK EFSNETFEML EQNGDVNLAL MNFNTKDRRT EIQARDSELC GRNECERSLI  240
DPAIHISEDL GSHNRKSKDG KDELMPELET IPALGSNSAC IVARQVGCEK TEAGDTVLLC  300
SDQIQKMIED EHPENSPASG KSSCISDNDS RTAMTMESEI EPYKLNVPAS DEFSGIHGGS  360
HIADTLSGEQ DQRSSDSNEI RPESYNKGEE SAGVDDLIQI AAESLIHMSL ETSPCYQESS  420
IQAGSDDLDN EDKEQPQCSC DSFELMTLKL TESSVDDYSV TSKAFEISDS ERKDCGIKLK  480
RGRRMKDFQR DILPGLASLS RHEIREDINI LEGVLRSREY KKMRAKMGNG ESWCTPNHMT  540
EASGICVSMN PRWEFKVHEV AQSSFRRANY LFNCISDQNQ KRSIEDLSLM AQETVNGFRK  600
LLTLLDDGSG SKQSSECKRI RKGPLLKSHT INPTELMESS SSQPQILRQM ISNQPKTAGM  660
NYMIPRNVVV LPNLIMGLQL HHSSILPQSM EKKIILPKTS SVSDQDDQSC LFLSKRRDHD  720
EEEASTKCAA STGGCHCSKR RKLRIKKTIR VPAVSNKLSD IPPDDFSWRK YGQKPIKGSP  780
YPRSYSKCSS LRGCPARKHV ERSLEDPNML VVTYEGDHKH SKITFQAPNL IV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	2e-43	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMP02240