PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93890
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 323aa    MW: 36085.6 Da    PI: 7.2794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93890genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28e-34169226259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
               +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  OMO93890 169 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYQDPSVVITTYEGQHNHP 226
               8********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MSDHEFRDFY YHATFGETDM YRVSSTVNHQ AQADPSSYMS FTDCLHSSLD YGSLEKAFGL  60
SPSSSEVFSS IEGNNIQTKQ EVTGAGDLGN NNNNSEVMTN PNSSISSSSS EAGCEEDSDK  120
SKKDRQPKGS SEDGGESSKK GNKGKKKGEK KQKEPRFAFM TKSEVDHLED GYRWRKYGQK  180
AVKNSPYPRS YYRCTTQKCT VKKRVERSYQ DPSVVITTYE GQHNHPLPTT LRGSAAGLFP  240
PSLFTPSPLS AGPSFPHELF MQMPHHHHMI NNQAAGSAGS MFSSESLNPF QQYNHNRHHQ  300
VPTADDYGLL QDMVPSRFLK HEP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.18e-58WRKY family protein