PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86139
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 341aa    MW: 36767.7 Da    PI: 10.196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86139genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.62e-31265322359
               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  OMO86139 265 DEYSWRKYGQKPIKGSPYPRGYYKCSTIrGCPARKHVERAPDDPSMLIVTYEGEHRHS 322
               9************************9877****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MAVDLMSFPK MNDQMAIQEA ASQGLKSMEH LIRLMSHQKS NHVDCTDLAD VTVSKFKKVI  60
SLLNRTGHAR FRRGPVQSTS SSSSPSSSSA SLTVPNSHKI LSLTPAPIST PATVNPATVA  120
TPVITPASFV QSQPQSLTLD FTKPNLFSSS AKSTELEFTK ESFSVSSNSS FMSSAITGDG  180
SVSNGKLGSS LFVQPAPAVS AGKPPLSTAP YKKRCHEHDH SEDVSGKFSG SGSGKCHCSK  240
RRKNRVKKVI RVPAISSKIA DIPPDEYSWR KYGQKPIKGS PYPRGYYKCS TIRGCPARKH  300
VERAPDDPSM LIVTYEGEHR HSQSAMQENV APAVGLVFES T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-125WRKY family protein