PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83687

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 829aa MW: 91453.7 Da PI: 7.9179

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83687	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	218	275	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k OMO83687 218 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 275 8**************************************.*************85 PP
2	WRKY	105.6	2.6e-33	379	437	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ OMO83687 379 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 437 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence
MVMEEQILAS SSSAAAATQH VQPTCDPSGS SVAGGARYKL VAPAKLPISR SACITIPPGL 60 SPSSFLESPV LLSDVKAEPS PTTGSLIKPQ AVHASIASST FSATAVCSFD ERPSSCFEFR 120 PHPRSNMAPA DLNHQRSEPS LQIQYQPVSF NSSTSVKSEM AGSSNELSLS VPVHATASVT 180 TAPADVDVEE LNQIGNPNSG IQSGQSDQKG GGTSVPSDDG YNWRKYGQKH VKGSEFPRSY 240 YKCTHPNCEV KKLFERSHDG QITEIIYKGT HDHPKPQPSR RYSSGNIMSS QEERSDKVSS 300 LTGRDASMYG QMAHSIEPNS AADLSPVTVN DDNVDEVDDD DPFSKRSRKT DGGIDITPVV 360 KPIREPRVVV QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTNAGC PVRKHVERAS 420 HDPKAVITTY EGKHNHDVPT ARNNSHDTAG PVVVNGPSRI RSEENDAISL DLGVGINCAP 480 ENSSNEHQQL HSELIQGHPQ TGGSTFKLVQ TTPMTAYYGV FNGGINQYGS REHASESRGV 540 EIPPLNHSYA YPQSMGRILT VWASLKENVN CASKLTDVIG LGCRQENITR KKGCCDDSKN 600 GNVEKELVHQ LKNPFPEALF RPNYPKTRFY ELNIGDPSRN IIELIFQRAS MDPSKLPWKI 660 QRVLRVKNSI EVLESFEEYR EKVMKKAYEQ HKRHPRSMVD GNELLLFYGT TMACCSRKHK 720 QVTELCKDPS CRACRIIHSR FDMEFTRKNG IRLSTSSEEV SDSMVSFKLK NLKRAVIVCR 780 VIAGRIASNI NGVYGECDSF GREGPQSNLE YLIVQNPCAV LPCFVIVFN

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence

MVMEEQILAS SSSAAAATQH VQPTCDPSGS SVAGGARYKL VAPAKLPISR SACITIPPGL  60
SPSSFLESPV LLSDVKAEPS PTTGSLIKPQ AVHASIASST FSATAVCSFD ERPSSCFEFR  120
PHPRSNMAPA DLNHQRSEPS LQIQYQPVSF NSSTSVKSEM AGSSNELSLS VPVHATASVT  180
TAPADVDVEE LNQIGNPNSG IQSGQSDQKG GGTSVPSDDG YNWRKYGQKH VKGSEFPRSY  240
YKCTHPNCEV KKLFERSHDG QITEIIYKGT HDHPKPQPSR RYSSGNIMSS QEERSDKVSS  300
LTGRDASMYG QMAHSIEPNS AADLSPVTVN DDNVDEVDDD DPFSKRSRKT DGGIDITPVV  360
KPIREPRVVV QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTNAGC PVRKHVERAS  420
HDPKAVITTY EGKHNHDVPT ARNNSHDTAG PVVVNGPSRI RSEENDAISL DLGVGINCAP  480
ENSSNEHQQL HSELIQGHPQ TGGSTFKLVQ TTPMTAYYGV FNGGINQYGS REHASESRGV  540
EIPPLNHSYA YPQSMGRILT VWASLKENVN CASKLTDVIG LGCRQENITR KKGCCDDSKN  600
GNVEKELVHQ LKNPFPEALF RPNYPKTRFY ELNIGDPSRN IIELIFQRAS MDPSKLPWKI  660
QRVLRVKNSI EVLESFEEYR EKVMKKAYEQ HKRHPRSMVD GNELLLFYGT TMACCSRKHK  720
QVTELCKDPS CRACRIIHSR FDMEFTRKNG IRLSTSSEEV SDSMVSFKLK NLKRAVIVCR  780
VIAGRIASNI NGVYGECDSF GREGPQSNLE YLIVQNPCAV LPCFVIVFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	0.0	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO83687