![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO83314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 320aa MW: 35440.9 Da PI: 8.0733 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.8 | 4.6e-12 | 41 | 95 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkl 53 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k+ OMO83314 41 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKK 95 78*******************99998898888888*****************986 PP | |||||||
2 | AP2 | 51.5 | 2.6e-16 | 104 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g OMO83314 104 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 155 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence |
MAKLSQKTQK DSAAANAAKP TAKVKRTRKS VPRDSPPQRS SVYRGVTRHR WTGRYEAHLW 60 DKNCWNESQN KKGRQGAYDD EEAAAHAYDL AALKKSSGFS RGVSKYRGVA RHHHNGRWEA 120 RIGRVFGNKY LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPNHQSDAN 180 SSENAQQDLN SDTNSTLSPK DDIGVGFSIQ PQSYSTSETS ETPLWLGSGG GGGSAANASS 240 ASSALGLLLQ SSKFKEMLER TSVVDSPSPP PEPDVRRRSF PDDIQTYFDC QDSSNYTESD 300 DIFGDLNPFV TPMFHCELDG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79700.2 | 2e-62 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO83314 |