PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83201

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 487aa MW: 52071 Da PI: 5.0717

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83201	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.2e-31	257	315	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ OMO83201 257 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 315 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MENYQGDLND IVRGGPMGCG GGGGGGGAGH QAALDVHVPS ATSSTWQNQN QGFPCVDSDP 60 LNFSSSALED HRDDRVVINH NFGDPFSTMR DPLLHELNVA ANSTTYFGSS PNSAIDNNNN 120 NNNNNKIFEE ELRSPAACNI FSRIQISPNS NKLAAVAMSP CDSSPPMMAA GAGGVGIGVS 180 PRGGIKAPAA LGSDMIINGG NSSKSCLIDN TGAAGSLQIS SPRNLGIKRR KSQAKKVVCI 240 PAPAAANSRS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTD 300 PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PSKTNNNASK TSPTSQQQNQ NTLLNPKEEV 360 KENIDEALSP TVGPSSTASA SVKEEIEIED IDHHKQDDAA DQIFVEAAGG NNSNMAQQTY 420 RPAMAEGSNS EDFFADLDEI ETDHLNLLFP QGFSAEDHGE EQQKDQNKAM DPFSLFDWPS 480 GDNNPSF

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MENYQGDLND IVRGGPMGCG GGGGGGGAGH QAALDVHVPS ATSSTWQNQN QGFPCVDSDP  60
LNFSSSALED HRDDRVVINH NFGDPFSTMR DPLLHELNVA ANSTTYFGSS PNSAIDNNNN  120
NNNNNKIFEE ELRSPAACNI FSRIQISPNS NKLAAVAMSP CDSSPPMMAA GAGGVGIGVS  180
PRGGIKAPAA LGSDMIINGG NSSKSCLIDN TGAAGSLQIS SPRNLGIKRR KSQAKKVVCI  240
PAPAAANSRS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTD  300
PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PSKTNNNASK TSPTSQQQNQ NTLLNPKEEV  360
KENIDEALSP TVGPSSTASA SVKEEIEIED IDHHKQDDAA DQIFVEAAGG NNSNMAQQTY  420
RPAMAEGSNS EDFFADLDEI ETDHLNLLFP QGFSAEDHGE EQQKDQNKAM DPFSLFDWPS  480
GDNNPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-89	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO83201