PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79927

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 933aa MW: 105664 Da PI: 5.6512

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79927	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.3e-30	249	308	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ OMO79927 249 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 308 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence
MVKEEKKMEI DLSLKIDAKQ QQQQKEEEKE EAKENMQEND QEEEKSAHDS EDKEETAAAM 60 AATGEVEDGT APLELSSLQE NINSEELSVL QMEMNRMKEE NKVLRKVVEK TMQEFYDLQM 120 SGRNDEKYSS QEQQAINKIP RNSKNGSPSS LQDDNDEDNE LGLSLRLKTS CSPREREKDH 180 HEDYHHHQKE ELQDKELTES QEIMNQNAPI SVQNKLQQSH LSAITTQTVS PPNRKARVSV 240 RARCQTATMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT 300 YEGTHNHPLP VGATAMASTA SAAAASFMLV DSSNPLITSN IGALQNIPNN YSNPHQNNTI 360 NSASSSSSSH HFSNINRNMM NINDPSKGIV LDLTKTHHNF ASSSTSSAHQ QQQQAFPWMP 420 SNRSLNYGYP LPISNNAFGG SSREWKLGED QDKSLAENVT AIASDPKFRV AVAAAISSLI 480 NKETTQTHPN NPFVGREGES GSTATNNWPK RNKMGSTAVE KTAEELQREI DELHRQQREI 540 TERLRDPRGL RRGGLSAGVS PRNFAANGGR GRNFPRQADR NDAEDLPPAK RRLSSAVVKV 600 EDGEIIDDAE GAKDVSDTAV EGSDAVNQTD RNLSSTRQSG WSRRDGNQRA LKKDTEAPIT 660 EHVPRILPKN EDLSLVNRNK RMLGQLLGTL ERFRKEDMQL SGTEAMMRRS NSLQRAEQRA 720 REESERLRLQ EREQIAEKRR RDLTLRARVM AKAEEKKLEL LFLQWSEHHR KLSNFIRTKT 780 EPAIYYLPKN PLPEDATMLE QRKEKEFLEW KTARREELSE YQKQIGEQYV ANVEKDLERW 840 QNARKARKAN NDMNLQETMD KELDTHRLEH GPKKRKIPGG SNEDEEDVED INAGEDDMMD 900 DVLGVDDNGR RGDEAAKTEA DDTGPPPDNI DEQ

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence

MVKEEKKMEI DLSLKIDAKQ QQQQKEEEKE EAKENMQEND QEEEKSAHDS EDKEETAAAM  60
AATGEVEDGT APLELSSLQE NINSEELSVL QMEMNRMKEE NKVLRKVVEK TMQEFYDLQM  120
SGRNDEKYSS QEQQAINKIP RNSKNGSPSS LQDDNDEDNE LGLSLRLKTS CSPREREKDH  180
HEDYHHHQKE ELQDKELTES QEIMNQNAPI SVQNKLQQSH LSAITTQTVS PPNRKARVSV  240
RARCQTATMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT  300
YEGTHNHPLP VGATAMASTA SAAAASFMLV DSSNPLITSN IGALQNIPNN YSNPHQNNTI  360
NSASSSSSSH HFSNINRNMM NINDPSKGIV LDLTKTHHNF ASSSTSSAHQ QQQQAFPWMP  420
SNRSLNYGYP LPISNNAFGG SSREWKLGED QDKSLAENVT AIASDPKFRV AVAAAISSLI  480
NKETTQTHPN NPFVGREGES GSTATNNWPK RNKMGSTAVE KTAEELQREI DELHRQQREI  540
TERLRDPRGL RRGGLSAGVS PRNFAANGGR GRNFPRQADR NDAEDLPPAK RRLSSAVVKV  600
EDGEIIDDAE GAKDVSDTAV EGSDAVNQTD RNLSSTRQSG WSRRDGNQRA LKKDTEAPIT  660
EHVPRILPKN EDLSLVNRNK RMLGQLLGTL ERFRKEDMQL SGTEAMMRRS NSLQRAEQRA  720
REESERLRLQ EREQIAEKRR RDLTLRARVM AKAEEKKLEL LFLQWSEHHR KLSNFIRTKT  780
EPAIYYLPKN PLPEDATMLE QRKEKEFLEW KTARREELSE YQKQIGEQYV ANVEKDLERW  840
QNARKARKAN NDMNLQETMD KELDTHRLEH GPKKRKIPGG SNEDEEDVED INAGEDDMMD  900
DVLGVDDNGR RGDEAAKTEA DDTGPPPDNI DEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	5e-60	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO79927