PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79587
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 298aa    MW: 33617.1 Da    PI: 5.4173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79587genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29123181259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp +++itY+ eH h 
  OMO79587 123 SDIWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPGTFIITYTAEHSHA 181
               79*************************998****************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MENPPFLFDP WSTFDDFETK PKVVLDELQE LYKPFYPDQL NPFSTQTIIT NSLTVPQDHS  60
DESADNKKRS QQSVSVSADQ SAASHSGTNK DSTPTVPNKP KRSSRKNQQN RVVHHVKAEG  120
VSSDIWAWRK YGQKPIKGSP YPRSYYRCSS SKGCLARKQV ERSCSDPGTF IITYTAEHSH  180
AHPTRRNSLA GSTRNKSSST PKSTTGSVKN NEPCCEAADQ TVVSPTTTIE EHEDFQRIKL  240
IEEQMFEDIG EGDRILTPDI MLSDELVQSL ENFEGLFLDQ FSDLSNNELW SMNESMQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-40WRKY family protein