PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79225

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 581aa MW: 63040 Da PI: 5.6979

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79225	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.5e-30	248	307	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ OMO79225 248 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGNHNHP 307 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MEVLLMNMLS RADAAAVGQE EGFSPSEARK IDIGRELQKN SDRNSSSPSS HEDLMDDKED 60 DELQSAKAEM GSVKEENEKL KMMLEQIQEN YKSLQLRFLE ILQQGGSSAS KKSTESSSSD 120 PSHNDEHELV SLSLGRRSPS PTGSKKDEKN IVNSSKSREE QEIKAGLSLG LDSKFQLSTE 180 IVLNPSPENS SGDQAKEYEE GETLTPSNKI NPKTTRNEDE DQEPAQQGPG PVKRARVSVR 240 ARCDAPTMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPGC PVRKQVQRCA DDMSILITTY 300 EGNHNHPLPV SATAMASTTS AAASMLLSGS STSQAGLSST LSTELNGLNF SHDNSRARQF 360 YLPNSTSPNN LFPTVTLDLT SPSSSSNYFN RFSTNYPSAA ARFPSTSLNF SSSESNILPT 420 VWGNSNYPTY VASAFNNQTG NLNLGKDQSQ EVQFYQSFLE KNKNFQHGAS QQSLTETLTK 480 AITSDPSFRS VIASAISSMV GSNAKPGDQS DENFGQNLIQ AISQNLLAQN GKGCGSTYFN 540 GLTSSSSTTS HSGSSLQSSF PFSIFNSAST PASDHKEHKN N

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MEVLLMNMLS RADAAAVGQE EGFSPSEARK IDIGRELQKN SDRNSSSPSS HEDLMDDKED  60
DELQSAKAEM GSVKEENEKL KMMLEQIQEN YKSLQLRFLE ILQQGGSSAS KKSTESSSSD  120
PSHNDEHELV SLSLGRRSPS PTGSKKDEKN IVNSSKSREE QEIKAGLSLG LDSKFQLSTE  180
IVLNPSPENS SGDQAKEYEE GETLTPSNKI NPKTTRNEDE DQEPAQQGPG PVKRARVSVR  240
ARCDAPTMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPGC PVRKQVQRCA DDMSILITTY  300
EGNHNHPLPV SATAMASTTS AAASMLLSGS STSQAGLSST LSTELNGLNF SHDNSRARQF  360
YLPNSTSPNN LFPTVTLDLT SPSSSSNYFN RFSTNYPSAA ARFPSTSLNF SSSESNILPT  420
VWGNSNYPTY VASAFNNQTG NLNLGKDQSQ EVQFYQSFLE KNKNFQHGAS QQSLTETLTK  480
AITSDPSFRS VIASAISSMV GSNAKPGDQS DENFGQNLIQ AISQNLLAQN GKGCGSTYFN  540
GLTSSSSTTS HSGSSLQSSF PFSIFNSAST PASDHKEHKN N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	9e-91	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO79225