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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO79207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | AP2 | ||||||||
Protein Properties | Length: 385aa MW: 43880.9 Da PI: 8.0944 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.2 | 1.5e-11 | 65 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g OMO79207 65 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 121 789******************88887784446666.99***9**************98 PP | |||||||
2 | AP2 | 52.4 | 1.3e-16 | 164 | 215 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g OMO79207 164 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 215 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence |
MEMMLAKNEQ YQGRRRLCSV DGEVKPVRCV KRRRRDPASV ALGCDDNQGQ QNDQTNTAPT 60 VKRSSRFRGV SRHRWTGRYE AHLWDKLSWN VTQKKKGKQG AYDDEEAAAR AYDLAALKYW 120 GTSTFTNFPI SDYEKEVEIM QSMTKEEYLA SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA 180 RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW LKPGTNNLIA 240 PNETLGMPEP ELVPLTSSYS PRDIESNKPS FCHSFATDYL NSPQKQEVLE TKLPTNSYNK 300 SSSSPTALGL LLRSSIFREL VEKNANINVS EDESTDADDE PKNRQARCDD ELGGLFYDGF 360 SDFPFLCSSG KDSLELQERE NPFIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 35 | RRRLCSVDGEVKPVRCVKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-75 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO79207 |