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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO72620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | AP2 | ||||||||
Protein Properties | Length: 437aa MW: 47764.4 Da PI: 6.8491 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.9 | 1.6e-10 | 196 | 246 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ k +g OMO72620 196 SHIWGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVDAARAYDKAAIKCNG 246 6788******.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence |
MLDLNLSVVL SGGCGGDDDS AVEMAGAKLR QFSGCCNNNN NNNNQMESSG SFDSSVVNAD 60 TTTTTGDDDS SSNAAATDTI AYSFGILKTT QEEQGDNNNN SNRTISLFPV NVEGGGGKST 120 GSSQKQWLDL GGSREASELR SGAAEQRITA HQQQQQQQLQ QVQLRHQVKK SRRGPRSRSS 180 QYRGVTFYRR TGRWESHIWG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VDAARAYDKA 240 AIKCNGREAV TNFEPSTYEG ELISDPENGD RNQGLDLNLG IAPPDSQKEN DNTNNYAIQH 300 GWDGMPLERG ARIENSAPGA MRVQPSLGQA MAFKHLPNWN GANPSFFPVY RERAIEKRIE 360 VDSAPSWAWQ MQSPYGGANP VPLFPTAASS GFSSSSITSP SAAAGQLRNI PNTTFLHHHH 420 FPPAITNPNI SNFYCRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 4e-40 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO72620 |