PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66339

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 954aa MW: 106323 Da PI: 6.0804

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66339	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.6	9.7e-32	117	173	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYY+Ct ++C++kk+vers++dp++++itYeg H h OMO66339 117 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPRCSAKKQVERSRDDPDTLIITYEGLHLH 173 8******************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence
MEKDNQKDDW LDGSSEDEIV RELLDDESPF FVLPQATIQA RSRTLLEEEE ATKRMISNVY 60 SGPRIEDIEN ALSGTSWKDQ SQSQQQTRLN SLLERGLSKI ENKYTLKLKC FGNGMADDGY 120 KWRKYGQKSI KNSPNPRSYY KCTNPRCSAK KQVERSRDDP DTLIITYEGL HLHFAYPYFP 180 LNNTLEQPNL HNQDDSPTKK PKKAISEAES QAFGTSQAQE TAANVNHEPL LPSSFDEGGC 240 PQEMGNLEGF GQQGLLEDMN VVISRILLMN ESRLFRPVGN ACISRVNQGL VRGYFAPAGI 300 GKQLFSKSPW SNLDSVLANS RVRRSFCSQG PKKSKFGNFF PKFLKRTPKA NEKKSESKVM 360 SIVLLLGMVY TSIFSDQKQI SFQEFQIELL ESGLVEKIVV SNKSVAEVYV KSSSNANQTT 420 DDTNTSQGGT PTRLNVGQYK FNIGSVDSFE AKLKEAQEEL GIKSHDRVPV FFKDVAGCDE 480 AKQEIMEFVH FLKNPKKYEE LGAKIPKGAL LVGPPGTGKT LLAKATAGES GVPFLSMSGS 540 EFRELYVGVG TSRVRNLFQE ARQCAPSIIF IDEIDSIGRA RGLKRGNNDN EGDNTLNQLL 600 VEMDGVRTTS GVVVLAGTNR PDILDEALLR PGRFDRKITI DAPDIKGRDQ IFRIYLEKLK 660 LDHEPSYYSQ RLAALTPGFA GAEIANVCNE AALVAARNES AQITMEHFEA AIDRVIGGLE 720 KKNKVISKLE RRTVAYHESG HAVAGWFLEH AEPLLKVSIV PRGTAALGFA QYVPNENLLM 780 TKEQLFDMTC MTLGGRAAEQ VLLGKISTGA QNDLKKVTKM TYAQVAVYGF SDKVGLVSFP 840 QRGDGFYSNQ TGAIIDTEVR EWIGKAYERT VQLIEEHKEH VAQIAELLLE KEVLHHEDLV 900 RVLGERPFKS SEPTNYDRFM EGFQENNESK DTATEMKATD DDRSTPLEPE AVPA

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence

MEKDNQKDDW LDGSSEDEIV RELLDDESPF FVLPQATIQA RSRTLLEEEE ATKRMISNVY  60
SGPRIEDIEN ALSGTSWKDQ SQSQQQTRLN SLLERGLSKI ENKYTLKLKC FGNGMADDGY  120
KWRKYGQKSI KNSPNPRSYY KCTNPRCSAK KQVERSRDDP DTLIITYEGL HLHFAYPYFP  180
LNNTLEQPNL HNQDDSPTKK PKKAISEAES QAFGTSQAQE TAANVNHEPL LPSSFDEGGC  240
PQEMGNLEGF GQQGLLEDMN VVISRILLMN ESRLFRPVGN ACISRVNQGL VRGYFAPAGI  300
GKQLFSKSPW SNLDSVLANS RVRRSFCSQG PKKSKFGNFF PKFLKRTPKA NEKKSESKVM  360
SIVLLLGMVY TSIFSDQKQI SFQEFQIELL ESGLVEKIVV SNKSVAEVYV KSSSNANQTT  420
DDTNTSQGGT PTRLNVGQYK FNIGSVDSFE AKLKEAQEEL GIKSHDRVPV FFKDVAGCDE  480
AKQEIMEFVH FLKNPKKYEE LGAKIPKGAL LVGPPGTGKT LLAKATAGES GVPFLSMSGS  540
EFRELYVGVG TSRVRNLFQE ARQCAPSIIF IDEIDSIGRA RGLKRGNNDN EGDNTLNQLL  600
VEMDGVRTTS GVVVLAGTNR PDILDEALLR PGRFDRKITI DAPDIKGRDQ IFRIYLEKLK  660
LDHEPSYYSQ RLAALTPGFA GAEIANVCNE AALVAARNES AQITMEHFEA AIDRVIGGLE  720
KKNKVISKLE RRTVAYHESG HAVAGWFLEH AEPLLKVSIV PRGTAALGFA QYVPNENLLM  780
TKEQLFDMTC MTLGGRAAEQ VLLGKISTGA QNDLKKVTKM TYAQVAVYGF SDKVGLVSFP  840
QRGDGFYSNQ TGAIIDTEVR EWIGKAYERT VQLIEEHKEH VAQIAELLLE KEVLHHEDLV  900
RVLGERPFKS SEPTNYDRFM EGFQENNESK DTATEMKATD DDRSTPLEPE AVPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	6e-51	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO66339