PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64385

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 210aa MW: 23640 Da PI: 9.5946

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64385	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104	7.9e-33	131	189	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ OMO64385 131 LDDGYRWRKYGQKAVKNSIFPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 189 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MDGQESNQSA PPLPPAAPPL LSPLTTPFLF ATPPLPPSSS SLHPPLLETH QILPDIDWVS 60 LLSGQGLMGE NIYKPMNIES ASSSSLMAEN GGHDHQDDKL GINKDKRKGS RIKKTTRPRF 120 AFQTRSADDI LDDGYRWRKY GQKAVKNSIF PRSYYRCTHH TCNVKKQVQR LSKDTSIVVT 180 TYEGIHNHPC EKLMETLTPL LKQMQFLSRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	1e-58	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO64385