PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63189

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 427aa MW: 47264.7 Da PI: 6.5226

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63189	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.4	1.7e-24	98	155	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy WrKYGqK + gs++pr+YY+C + +Cp+kk ve +++d+++ +tY+g H h OMO63189 98 LDDGYIWRKYGQKCIMGSQYPRNYYKCITLRCPAKKWVEPDTSDKSFSFVTYQGIHIH 155 59******************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MEERLNATDL TESIPSTPEE CSFSSDKSKR VEVEDDKINL ASEICEVDGD EDEPKAKRWN 60 CTNNIENKDL ISCMKENTVA RRIVRAKGVA IRTRNELLDD GYIWRKYGQK CIMGSQYPRN 120 YYKCITLRCP AKKWVEPDTS DKSFSFVTYQ GIHIHVRQPY VNELNNCLSQ VCHDHGADNM 180 ENAAEGAKAV MNFTKEYPGF PEASIGDESQ GSEDKSLLEV SREAEGQQPD GKAETMRTSS 240 STMPTPSIFS SNYLTISPTS KPRPAKFSDP SPQMNTSNVL ASMTMTTGEF VVQSLDQKSD 300 SSNSQQSISQ KDNKSTDVFH LPQPSPSTST STSAITQLSN AKVSTPSGGG KVGIGGPMVK 360 KWKSTKPKVI TLSNPGDFRE MVQRMTGSRG KTKNDRKTYK EEVEDEKGQG VVESGHFIPF 420 RIGGPQT

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MEERLNATDL TESIPSTPEE CSFSSDKSKR VEVEDDKINL ASEICEVDGD EDEPKAKRWN  60
CTNNIENKDL ISCMKENTVA RRIVRAKGVA IRTRNELLDD GYIWRKYGQK CIMGSQYPRN  120
YYKCITLRCP AKKWVEPDTS DKSFSFVTYQ GIHIHVRQPY VNELNNCLSQ VCHDHGADNM  180
ENAAEGAKAV MNFTKEYPGF PEASIGDESQ GSEDKSLLEV SREAEGQQPD GKAETMRTSS  240
STMPTPSIFS SNYLTISPTS KPRPAKFSDP SPQMNTSNVL ASMTMTTGEF VVQSLDQKSD  300
SSNSQQSISQ KDNKSTDVFH LPQPSPSTST STSAITQLSN AKVSTPSGGG KVGIGGPMVK  360
KWKSTKPKVI TLSNPGDFRE MVQRMTGSRG KTKNDRKTYK EEVEDEKGQG VVESGHFIPF  420
RIGGPQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	3e-19	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO63189