PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61754

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 488aa MW: 52349.9 Da PI: 5.9192

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61754	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	25.3	3e-08	185	202	2	19
--SS-EEEEEEE--TT-S CS WRKY 2 dDgynWrKYGqKevkgse 19 +DgynWrKYGqK+vk+ + OMO61754 185 SDGYNWRKYGQKQVKSPK 202 8**************865 PP
2	WRKY	96.9	1.3e-30	331	387	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+ +pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+ OMO61754 331 DGYRWRKYGQKMVKGNSNPRNYYRCTSAGCPVRKHIETAVDNTNAIIITYKGVHDHD 387 9*******************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MAEPEPESES QTKQTKRQEE QQNDELKGGE EEEVEGLGRV SESQGAEAAP SGDAEVRDSQ 60 SETLKNDDRS EGVQVNSTSE SKEEGAEFKE QVKVAHPEVS PSLSGQDAEP QTPKQLEPSV 120 SPASLPQEST TSVSQGVSSA PNPTVPEQSL SDKKVNGVSV PEATQQESSN LTALSVVPTV 180 KTPVSDGYNW RKYGQKQVKS PKEIVNKGMH SHEPPRKNNF TRESKIVSSA VCVSRNIVTE 240 QPNRIPNDSD PSTSSKESVL ETTVNPERKR PCSSGSDGNG DMQVKEEHLS ESDPKKRMKK 300 GDAVCSASVL KSGKKPKFVV HAAGDVGISG DGYRWRKYGQ KMVKGNSNPR NYYRCTSAGC 360 PVRKHIETAV DNTNAIIITY KGVHDHDMPV PKKRHGPPSA PLVAAAAPAS MNNLQFSPSA 420 PLVAAAAPAS MNNLQFKKTD GVQNQVGSTQ WSVGTEGELT GEALDLGGEK AIESARTLLS 480 IGFEIKPC

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MAEPEPESES QTKQTKRQEE QQNDELKGGE EEEVEGLGRV SESQGAEAAP SGDAEVRDSQ  60
SETLKNDDRS EGVQVNSTSE SKEEGAEFKE QVKVAHPEVS PSLSGQDAEP QTPKQLEPSV  120
SPASLPQEST TSVSQGVSSA PNPTVPEQSL SDKKVNGVSV PEATQQESSN LTALSVVPTV  180
KTPVSDGYNW RKYGQKQVKS PKEIVNKGMH SHEPPRKNNF TRESKIVSSA VCVSRNIVTE  240
QPNRIPNDSD PSTSSKESVL ETTVNPERKR PCSSGSDGNG DMQVKEEHLS ESDPKKRMKK  300
GDAVCSASVL KSGKKPKFVV HAAGDVGISG DGYRWRKYGQ KMVKGNSNPR NYYRCTSAGC  360
PVRKHIETAV DNTNAIIITY KGVHDHDMPV PKKRHGPPSA PLVAAAAPAS MNNLQFSPSA  420
PLVAAAAPAS MNNLQFKKTD GVQNQVGSTQ WSVGTEGELT GEALDLGGEK AIESARTLLS  480
IGFEIKPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	1e-108	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO61754