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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO58715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | AP2 | ||||||||
Protein Properties | Length: 407aa MW: 46060.5 Da PI: 8.0702 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.5e-11 | 71 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a+ k++g OMO58715 71 SRFRGVSRHRWTGRFEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAAIKYWG 127 789******************88887786625555.********************98 PP | |||||||
2 | AP2 | 51.1 | 3.3e-16 | 170 | 221 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g OMO58715 170 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 221 79****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence |
MEMVTAKSEL SPGRRRLCMA EGESIETKCI KRRRRDPSSV SLGGNNQQGE QQQQQQLQND 60 QPTATTVKRS SRFRGVSRHR WTGRFEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL 120 AAIKYWGTTT FTNFPVSDYE KEIEIMKTVT KEEYLASLRR RSSGFSRGVS RYRGVARHHH 180 NGRWEARIGR VFGNKYLYLG TYSTQEEAAR AYDIAAIEYR GINAVTNFDL STYIRWLKPG 240 ANHSLASEEL KTNLASQPMT TSNLLPTEQT NDLPLFGSNP FMVEALDSPK KQDILPKNIP 300 VSPLAKSSSA TALSLLLRSS MFNKLVEQNL NANFDETEEN DSKDLPEIVD NNGVGEMFYN 360 DIDHVPFMCS SNTDILPGLE SEESKLPLYN KTEQSLWNGA LNLPSLH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 35 | RRRLCMAEGESIETKCIKRRRR |
2 | 97 | 105 | PTQRKKGKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 6e-73 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO58715 |