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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO56628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | AP2 | ||||||||
Protein Properties | Length: 431aa MW: 48083.4 Da PI: 6.4537 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.1e-18 | 158 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+t+ eAa+a+++a+ k +g OMO56628 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGLFDTEIEAARAYDRAAIKCNG 207 78*******************......55**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence |
MWDLNDSPDQ PRDDESEGCS SQKTSIDGDD DKGKRVGSVS NSSSSAVVVE DGSEEEDGER 60 VRGTVAFKKR SSKIFGFSVP YEEESMDSDP APVTRQFFPL DQDPEMGASS GGSGPGGFPR 120 AHWVGVKFCQ SEPVAAAKSV EVSQPMKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG 180 KQVYLGLFDT EIEAARAYDR AAIKCNGKDA VTNFDPSIYE NELNSETSSN NNNAGDHNLD 240 LSLGNSTSKQ NNLEFGSDRQ NAMVNQHSLP PEVDWRYRGF RPSKLNLQKE GFRSDDPNHR 300 LRTDGYSEAE TMQLLSQTHI QSPVSIKSNN NEMPRYGQLR RPGENHMFHI LPPHINQQAY 360 QIQFPSSSNG GRIGSELSLS SSEQQQWQSS PHQLFANAAA SSGFPSQINR PNSHNHNWLQ 420 KNGFHSLMRP S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 7e-31 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO56628 |