PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO52098

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 543aa MW: 58554 Da PI: 6.743

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO52098	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.6	1.1e-11	179	235	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OMO52098 179 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 235 57*****************5444.2455536655.779999************98 PP
2	AP2	47.1	5.8e-15	278	329	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OMO52098 278 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 329 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MDNNNMNMGN MDSNSSPQNW LAFSLSNQQQ QQQQQQPSSS SSHLCLFEAF TSSSSTTKSS 60 AQEDDVTAAA TAGGGATELS MFRGGPKLED FLGTSSSSAA VAAAADHGGE VAPQHFPGET 120 PVTLSDTDIL YDSELKTIAA SFLRGFSSQQ ADTHKLQQVP PTLPAASKKA VDTFGQRTSI 180 YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGPTTTI 240 NFPICNYEKE LEDMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA 300 GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVNSIANSN LPIGGLTNKS 360 KNCSDSASDS KSTDDDRDQS SASSTMTFAS QPPAAAAAAA SSTLSFAIPI KQDPSDYWSN 420 IFGFNNNTGK SKNVAAAPTL FHQQANNGSG FQSPSGFGME FGGNTSATVN ESSNGLFNEV 480 GFVQQTSTSS LPFATPIAIN SNNNYEGSSN SGYGSSWIAQ SLHSYQTAKP SLSVFQTPIF 540 GME

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MDNNNMNMGN MDSNSSPQNW LAFSLSNQQQ QQQQQQPSSS SSHLCLFEAF TSSSSTTKSS  60
AQEDDVTAAA TAGGGATELS MFRGGPKLED FLGTSSSSAA VAAAADHGGE VAPQHFPGET  120
PVTLSDTDIL YDSELKTIAA SFLRGFSSQQ ADTHKLQQVP PTLPAASKKA VDTFGQRTSI  180
YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGPTTTI  240
NFPICNYEKE LEDMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA  300
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVNSIANSN LPIGGLTNKS  360
KNCSDSASDS KSTDDDRDQS SASSTMTFAS QPPAAAAAAA SSTLSFAIPI KQDPSDYWSN  420
IFGFNNNTGK SKNVAAAPTL FHQQANNGSG FQSPSGFGME FGGNTSATVN ESSNGLFNEV  480
GFVQQTSTSS LPFATPIAIN SNNNYEGSSN SGYGSSWIAQ SLHSYQTAKP SLSVFQTPIF  540
GME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-143	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO52098