PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50908

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 635aa MW: 69474.8 Da PI: 6.5711

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50908	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.1	1.9e-12	324	380	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g OMO50908 324 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 380 78*****************77776664346655.77****************98 PP
2	AP2	30.8	7.5e-10	389	429	12	55
AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 grW A+I + +k +lg+f t eeAa+a++ a+ k++g OMO50908 389 HGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 429 69***988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MKTLNESNNS NWLGFSLSPH MKMEVATDHP QHRHHHQYHH HHTQPSASAA SSVTVSNALP 60 TSFYLSPHLN ASGICYGVAE NGAFTSPLSV MPLKSDGSLC IMEALSRSQS EGIVPTSSPK 120 LEDFLGGATM ETHQYGSQER ETMALSLDSM YYHHQNADQE TNRQHSLDLL QEPFSQTHPF 180 YSGLACQTLY PSTLEEETKD AQLSADCNSQ IPQIGEEAMP CFKNWVARHY STHSSLEQPM 240 TGGMEDDGAA ASGSVGTMGC GDLQSLSLSM SPGSQSSCVT APRQISPSAT ECVAIETKKR 300 GAGKVGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG 360 YDMEEKAARA YDLAALKYWG PSTHINFPHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY 420 DIAAIKFRGV NAVTNFDITR YDVERIMASN TLLAGELARR NKETDSNNEA NDYNAPTLTN 480 GETIQQPEIS NVSGSDWKMA LYQSPQQQQN GGAVESLDQK SMSNGGNYRN PSFSMALQDL 540 IGVDSVNSSQ PLVEESTTKL GTHYSNPSSL VTSLNNSREG SPDKTGSTMH FAKPPLASKF 600 ISPTNGVSWF PSAQLRPAAA ISMAHLPVFA AWNDT

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MKTLNESNNS NWLGFSLSPH MKMEVATDHP QHRHHHQYHH HHTQPSASAA SSVTVSNALP  60
TSFYLSPHLN ASGICYGVAE NGAFTSPLSV MPLKSDGSLC IMEALSRSQS EGIVPTSSPK  120
LEDFLGGATM ETHQYGSQER ETMALSLDSM YYHHQNADQE TNRQHSLDLL QEPFSQTHPF  180
YSGLACQTLY PSTLEEETKD AQLSADCNSQ IPQIGEEAMP CFKNWVARHY STHSSLEQPM  240
TGGMEDDGAA ASGSVGTMGC GDLQSLSLSM SPGSQSSCVT APRQISPSAT ECVAIETKKR  300
GAGKVGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG  360
YDMEEKAARA YDLAALKYWG PSTHINFPHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY  420
DIAAIKFRGV NAVTNFDITR YDVERIMASN TLLAGELARR NKETDSNNEA NDYNAPTLTN  480
GETIQQPEIS NVSGSDWKMA LYQSPQQQQN GGAVESLDQK SMSNGGNYRN PSFSMALQDL  540
IGVDSVNSSQ PLVEESTTKL GTHYSNPSSL VTSLNNSREG SPDKTGSTMH FAKPPLASKF  600
ISPTNGVSWF PSAQLRPAAA ISMAHLPVFA AWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-110	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO50908