PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49950

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 546aa MW: 58956.3 Da PI: 8.1922

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49950	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	1.9e-30	199	258	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ OMO49950 199 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 258 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MASSSSRKDQ EDQLESAKAE MGEVREENQR LKIYLNRIMK DYQNLQMQFY DIVRQDAKKS 60 AAKTSNDDHQ QDIEPELVSL TLGRFSSDSK KLLDDNKKKT CSQGKKDHEQ RAAGSNNKEG 120 LSLGLDYKLE AASKSDVDDD EALANPSPTN SSQEPKEEET WPPSKVLKTM TSGDDEILQQ 180 NPVKKARVCV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC 240 AEDMSILITT YEGTHNHPLP MSATAMASTT CAAASMLLSG SSSSSSSTAN TPTNLHGLNF 300 YLSDNSKSKF YLPNSSLSAS SSHPTITLDL TSTPSSSPTQ FPFNRFSSAY PTATSRYPCT 360 SLSFGSSDSN TLFWGNANGL LSYGNSSQSL MKNQIGTMEN NIYQTLMQKN NLNPNPLPAA 420 HQHQQPLQDT IAAATKAITA DPNFQSALAA ALTSIIGSGG GGNNGGEGLG QKLKWAEQPF 480 PVTSSSGYSQ TVKGNVGCAS SFLNKSPSST TSQQQGSMLF LPPSLPFSTP KSASTSPGGD 540 SRNHSN

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MASSSSRKDQ EDQLESAKAE MGEVREENQR LKIYLNRIMK DYQNLQMQFY DIVRQDAKKS  60
AAKTSNDDHQ QDIEPELVSL TLGRFSSDSK KLLDDNKKKT CSQGKKDHEQ RAAGSNNKEG  120
LSLGLDYKLE AASKSDVDDD EALANPSPTN SSQEPKEEET WPPSKVLKTM TSGDDEILQQ  180
NPVKKARVCV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC  240
AEDMSILITT YEGTHNHPLP MSATAMASTT CAAASMLLSG SSSSSSSTAN TPTNLHGLNF  300
YLSDNSKSKF YLPNSSLSAS SSHPTITLDL TSTPSSSPTQ FPFNRFSSAY PTATSRYPCT  360
SLSFGSSDSN TLFWGNANGL LSYGNSSQSL MKNQIGTMEN NIYQTLMQKN NLNPNPLPAA  420
HQHQQPLQDT IAAATKAITA DPNFQSALAA ALTSIIGSGG GGNNGGEGLG QKLKWAEQPF  480
PVTSSSGYSQ TVKGNVGCAS SFLNKSPSST TSQQQGSMLF LPPSLPFSTP KSASTSPGGD  540
SRNHSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	4e-72	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO49950