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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG88391.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | AP2 | ||||||||
Protein Properties | Length: 2240aa MW: 238578 Da PI: 8.4368 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.6 | 3.6e-14 | 1325 | 1374 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV+++k++grW+++I++ k+++lg f ta+ Aa+ +++a +k++g GBG88391.1 1325 SDYKGVTFCKRKGRWESYIWV------DaKQVYLGGFTTADAAARVYDRAVLKFRG 1374 78*******************......44************************998 PP | |||||||
2 | AP2 | 33.1 | 1.4e-10 | 1729 | 1778 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV ++++g W + I d k+++lg f ta+ Aa+a+++a +k++g GBG88391.1 1729 SNYRGVAICRRTGGWTSCISDG-----GKQVYLGGFTTADAAARAYDRAVLKFRG 1778 57****************9993.....4************************998 PP | |||||||
3 | AP2 | 30.2 | 1.1e-09 | 1821 | 1863 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 s+y+GV+ + grW+A+ r +k ++lg f +e+Aa+a+++a GBG88391.1 1821 SRYRGVTLHT-GGRWEARMRR------KKLIYLGLFTEEEDAARAYDRAV 1863 79******99.9******999......7*******************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 2240 aa Download sequence |
MSHSFPATPT DGSRGIGFTE SGRFGNQRCT AMVCTRMTPV HFSSSATSAG SSLFVPRRQL 60 RDASADGDDV HVSTAQPVSA IGCDKLGRSE IGMMVTAREE ETESYCSPSR PAECPAKMVA 120 ADGFRLPLIN NHADPRCARN TAHPHHECIQ AISPARYGHD EGALYLGKDG SHGLESRICQ 180 REWAVNKEVD IPLASSSMAM AAPATLPLAA SQMAPPPTPP AAMAEAVAMT GERMTVVVED 240 SAADVEAAAT ATLDRTPSRA PPPPPQFLFH LAPYGDPGDL TTGGGGGGGG GNDSCSVHCL 300 AVCGDPDGCL TTGGGGGDCA CHVPAGQRSS LSRAALADDS VGTAGLRLAG CRRLESHHHQ 360 HAHRANASSL PLSVPLLSQS LQDIKEGAMR QSLHANRKDE TSDGFPLSTA RDPCFNTYKS 420 NQETGGPNQE GEGLGSVAEP LLGSPYPLDY PLIDLRHTAC DQTQRLPPRV VIRMQACSAD 480 RVSSEHISSS TKRSNRRSSS STSSMGTNGR TKADDGSIAR DIMKREINSE GLVCFSTSSS 540 SSSSPSSTSS SFSLPFHASG LFNGGNESSL SLVLPASAGP TTSSAFPPSS SSSSYSLSQS 600 LHASLLSSNR PSASARPVVD LRWAGSAPGQ NGGPGAETRS PSLVSCPAGN RSAIASLLKR 660 EEDQYLVRQL DQVLNQLQQQ GRHLARTTPL SSGDLHVVKV KREEEEEERS EQGNGQEEQD 720 REEEEEEEAE QKRERRSGHL LAQDGSHSQA TVPVLGDLQP IMITDQSSNG QEKTEGPKHQ 780 QLLVHRQRGR HSQIAMSMPS SSHGLFQSFD NDNRNEMEVK KEKDPLLVYH HSHHHSHHHS 840 YCHSYGCGDP RAPTILRSDL LQALRAQCME QQKQKEKEKE PTRMQEEEDE RDMDKEEEDG 900 EEQKEKENPL RRVHNGQTIV PKTEALQLAV HTRGEEGKEG EKEAEDEKDK QEKEEGAERT 960 AVQTVHSAVH KRLCGVILPV GREMTESGPG AMNPRPLKQL PVLYEQRAFP KLEPELELEL 1020 ELEPRLISVN GQKEEKVVHK AGTGAGTGAG TGAGTRGRAG TATGAGARVM RAGTETGAGT 1080 RARIGPETGA GTGTGTGTGT GRVKTGTGTG TGAVTGAGTG AGTGAGTGAG TGAGTGRART 1140 GTGAGAGTGA GTGRARTGTG TGAGTGTGRV RTGPETRART GAGTGAGTGP EAGAGTRDGT 1200 ATAAGARTGT AIGAGTRAGI GTGSGAGPRR SARGTSSGTG AASEVGPGTE NGPGTGIGTG 1260 TQARTEPAVA TRLTRRVPST RLLRSNQQQQ QQPDETIKTG GGGPASEVPV VKPAGTCYGP 1320 RARSSDYKGV TFCKRKGRWE SYIWVDAKQV YLGGFTTADA AARVYDRAVL KFRGPTAKVN 1380 FTASDYDADM QKVAHLTKEE FVRSLRRQRR CFSCGRSQYR GVKLHKCSHG EARMRRVLIK 1440 KYIYGGLFED EEDAARAYDR ALVRSSGKAA MTNFDFTQYQ GDVDFHKAAA MAARDAGGKS 1500 SDNGARSGAG AASGSGKRGA LIHNNSPNKK IKSDTASKTE ASIPPPPPTR TPPLCHPPPP 1560 GHDRRLSGSV MVAAQDRDIS ISSSVGGEHC RTLTIERRKP TRSVWTKTET DRPMVDKIDS 1620 VRTTEEIGHG TSFATGDGTI GAVSAATEAG PGTDNGPGMS IGTGIVARTE PAVGTRVTRR 1680 VPSTRLPQSN QQQQPEETIK TEGGDPASEP AVSAVKSDGT RYGPKSRSSN YRGVAICRRT 1740 GGWTSCISDG GKQVYLGGFT TADAAARAYD RAVLKFRGPA AELNFTASDY DADLQKVAHL 1800 TKEEYIDSLR RQRRCFSRGR SRYRGVTLHT GGRWEARMRR KKLIYLGLFT EEEDAARAYD 1860 RAVVRSNGKD SVTNFDLSQY QEELDFHKAA TMAARVAGGN SLDNVARSGE GAASGRGKRQ 1920 ALIHTNSPNK KEKLDTTSKT EASIHPPPPP PPTPRTPSCN PTPRTPSCNP TPLSRPPLPP 1980 PPPGHDRTIA AQFRDRDISI SSSVEGEKAT RSVWMTRKTD YQMMDKMDLV RVSEENDQNV 2040 PQLDEALDSF APGGESGSDL LLASAAGEGR RRLPSPEKVP LERWEEIMRQ PLFGNRWITN 2100 SQGQVMCSSA SPWKAWVKRG VVRIADLWDT DRRDWKTAGQ LRSTLAYCHH AERGLEEIID 2160 ATPLSWYSVL KKGPAVNEGD WIKIRGEDNT IMEMSWYGRR SFPATEERAK GSTFDNAVGR 2220 LDLGDGMPPC PPRSVPRSAP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 6e-42 | AP2 family protein |