![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GBG59355.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 542aa MW: 60927.6 Da PI: 9.7209 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.3 | 3.3e-07 | 135 | 177 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 ++GV+ k+ +Wv +Ir+ + +++lg f ++ eAa+++++a+ GBG59355.1 135 IFRGVY--KTGLKWVTHIRV------NgNTVYLGAFFSEVEAARLYDRAAY 177 689**7..43457*******......44**********99********985 PP | |||||||
2 | AP2 | 30.3 | 1e-09 | 326 | 369 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 s+++GV+ + + +W A I++ + k+ +lg+ t+e Aa ++++a+ GBG59355.1 326 SQFRGVYKN--NSKWQAGIKV------NgKQLHLGTVSTEEAAAHLYDRAAY 369 789***855..56********......44*********************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence |
MVSIRKKKSI ADLRTKSVKQ EPQSSSQPAS SVVEPAVATP GEGQVVSSSP SEYVQGSPRL 60 FAEQEIIAKR SELSLTPPTG DRASNAVHPD TENSAQSLKK RKRISSIERD HDRTRNREWD 120 GDEPLQPPPN KLQSIFRGVY KTGLKWVTHI RVNGNTVYLG AFFSEVEAAR LYDRAAYICK 180 RPPNFVMTDE EKNALDKLAW DEFLTKTKQE IAILARQEKK DRNNNSVEPP RRVSHYTGVF 240 STGRKWVAHI RVDGSTVFLG VVNSEDEASH LFDRIHTILL KLQTKCLSAT LRERYPSGRL 300 VPCEMRNGVD QYVHAVDEVK KLKEKSQFRG VYKNNSKWQA GIKVNGKQLH LGTVSTEEAA 360 AHLYDRAAYI LGRDTNLPIV TAEKEDLDKM TWEEFIASTK GGMLLKRDCR AKLSGRGGAR 420 LKTRGRNTAQ CDTEEKREDQ PVMVQPEREE VARLSPPVTR RSSIMAGRDR DRECSPAKDS 480 SLRAKRTKTD SAGHGKVQNF DQGSDSSMHF ADVNDTANAA DDTESRTRWM ISCLVEALEQ 540 HP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13040.2 | 2e-20 | ERF family protein |